Table 3.
The SNP markers that explained the largest proportion of variance for fillet yield using 20-SNP windows.
| Marker | Chr | Position (cM) | Alleles | VE (%) | Scaffold | Scaffold position | Scaffold size | Loc | Description |
|---|---|---|---|---|---|---|---|---|---|
| WINDOW 1 TOTAL PROPORTION 1.5% | |||||||||
| AX-89976492 | 9 | 125.19 | T/C | 0.13 | Scaffold_8612 | 10,780 | 26,627 | Intron | Beta-catenin-interacting protein 1 isoform x1 |
| AX-89970327 | 9 | 125.19 | A/C | 0.11 | Scaffold_516 | 399,414 | 728,099 | Intron | Calsyntenin-1-like isoform x2 |
| AX-89940136 | 9 | 125.19 | A/G | 0.12 | Scaffold_516 | 407,663 | 728,099 | Intron | Calsyntenin-1-like isoform x2 |
| AX-89936139 | 9 | 125.67 | A/C | 0.13 | Near* | None | |||
| AX-89944669 | 9 | 125.67 | G/T | 0.13 | Scaffold_32707 | 921 | 3946 | Exon 1 | Nudix hydrolase chloroplastic-like |
| AX-89940514 | 9 | 125.67 | T/C | 0.12 | Scaffold_10308 | 15,430 | 21,663 | Near* | None |
| AX-89937961 | 9 | 125.67 | G/T | 0.13 | Scaffold_516 | 586,177 | 728,099 | Exon 6 | Properdin |
| AX-89951506 | 9 | 125.67 | G/A | 0.12 | Scaffold_516 | 555,991 | 728,099 | Exon 3 | Transmembrane protein 201-like |
| AX-89938525 | 9 | 125.86 | G/A | 0.10 | Scaffold_52 | 1,795,215 | 2,128,772 | Intron | Atpase family aaa domain-containing protein 3-like |
| AX-89957923 | 9 | 126.04 | A/G | 0.13 | Scaffold_19674 | 6079 | 8261 | Near* | None |
| WINDOW 2 TOTAL PROPORTION 1.0% | |||||||||
| AX-89951447 | 9 | 117.12 | G/A | 0.10 | Scaffold_43535 | 864 | 3113 | Near* | None |
| AX-89940159 | 9 | 117.12 | T/C | 0.11 | Scaffold_347 | 148,757 | 935,129 | Intron | Serine threonine-protein kinase sbk1-like |
| AX-89924961 | 9 | 117.91 | C/T | 0.10 | Scaffold_347 | 414,782 | 935,129 | Exon 6 | Phd finger protein 20-like isoform x3 |
Chr, chromosome; VE, percentage of the genetic variance explained by the SNP; Loc, location in the scaffold with three possibilities: intron, exon, or near an exon.