Table 5.
The SNP markers that explained the largest proportion of variance for carcass weight using 20-SNP windows.
| Marker | Chr | Position (cM) | Alleles | VE (%) | Scaffold | Scaffold position | Scaffold size | Loc | Description |
|---|---|---|---|---|---|---|---|---|---|
| WINDOW 1 TOTAL PROPORTION 1.7% | |||||||||
| AX-89952551 | 27 | 75.09 | A/G | 0.12 | Scaffold_1006 | 143,453 | 383,627 | Near | nitric oxide inducible/serine threonine-protein kinase nlk |
| AX-89954149 | 27 | 75.09 | C/A | 0.12 | Scaffold_147 | 921,922 | 1,497,438 | Near | atp-sensitive inward rectifier potassium channel 1-like/cmp-n-acetylneuraminate-beta-galactosamide-alpha-sialyltransferase 4-like isoform x1 |
| AX-89938133 | 27 | 75.09 | A/G | 0.13 | Scaffold_1006 | 46,265 | 383,627 | Exon3 | nitric oxide inducible |
| AX-89948564 | 27 | 74.78 | G/A | 0.12 | Scaffold_8798 | 5532 | 26,005 | Near | Undetermined/None |
| AX-89974542 | 27 | 74.58 | G/T | 0.11 | Scaffold_842 | 38,757 | 463,739 | Intron | kinase suppressor of ras 1-like isoform x2 |
| AX-89926230 | 27 | 74.58 | A/G | 0.12 | Scaffold_1952 | 116,665 | 147,230 | Near | neurofibromin isoform x2/oligodendrocyte-myelin glyco |
| AX-89938965 | 27 | 74.43 | G/T | 0.12 | Scaffold_842 | 38,933 | 463,739 | Intron | kinase suppressor of ras 1-like isoform x2 |
| AX-89928353 | 27 | 73.96 | G/A | 0.10 | Scaffold_1675 | 177,158 | 191,261 | Intron | vascular endothelial zinc finger 1-like isoform x2 |
| AX-89968747 | 27 | 73.96 | A/G | 0.11 | Scaffold_3611 | 60,104 | 62,580 | Intron | unconventional myosin-xviiia-like isoform x1 |
| AX-89947091 | 27 | 73.96 | na | 0.10 | na | Na | |||
| AX-89942611 | 27 | 73.42 | C/A | 0.16 | Scaffold_3980 | 33,385 | 57,002 | Intron | unconventional myosin-xviiia-like isoform x2 |
| WINDOW 2 TOTAL PROPORTION 1.7% | |||||||||
| AX-89973675 | 17 | 115.87 | G/T | 0.10 | Scaffold_26752 | 3396 | 4948 | Intron | spectrin beta non-erythrocytic 1-like |
| AX-89969602 | 17 | 114.85 | C/T | 0.10 | Scaffold_24 | 197,378 | 2,579,057 | Intron | calpain-2 catalytic subunit-like |
| AX-89935000 | 17 | 114.02 | A/G | 0.17 | Scaffold_173 | 119,365 | 1,392,108 | Near | histone h2b 1 2-like/ubiquitin-conjugating enzyme e2 variant 1 |
| AX-89918454 | 17 | 114.02 | C/A | 0.12 | Scaffold_173 | 123,912 | 1,392,108 | Near | histone h2b 1 2-like/ubiquitin-conjugating enzyme e2 variant 1 |
| AX-89923840 | 17 | 113.51 | C/T | 0.18 | Scaffold_173 | 195,297 | 1,392,108 | Exon4 | ubiquitin-conjugating enzyme e2 variant 1 |
| AX-89925576 | 17 | 113.51 | A/G | 0.18 | Scaffold_173 | 160,398 | 1,392,108 | Near | histone h2b 1 2-like/ubiquitin-conjugating enzyme e2 variant 1 |
| WINDOW 3 TOTAL PROPORTION 1.0% | |||||||||
| AX-89940136 | 9 | 125.19 | A/G | 0.10 | Scaffold_516 | 407,663 | 728,099 | Intron | Calsyntenin-1-like isoform x2 |
Chr, chromosome; VE, percentage of the genetic variance explained by the SNP; Loc, location in the scaffold with three possibilities: intron, exon, or near an exon.