Skip to main content
. 2016 Nov 22;6:36838. doi: 10.1038/srep36838

Table 1. The component and standard errors of binding energy (in kcal mol−1) between (a) CNT and subtilisin, (b) substrate and subtilisin in water, acetonitrile and heptane media.

Contribution (a) CNT-subtilisin
(b) Substrate-subtilisin
CNT-wat CNT-acn CNT- hep CNT-wat Free-wat CNT-acn Free-acn CNT-hep Free-hep
ΔEelea 0.0 ± 0.0 0.0 ± 0.0 0.0 ± 0.0 −12.0 ± 1.1 −12.6 ± 0.9 −16.9 ± 1.2 −8.8 ± 0.6 −12.5 ± 1.2 −12.1 ± 1.9
ΔEvdwb −87.2 ± 2.9 −67.2 ± 3.4 −33.2 ± 3.9 −26.2 ± 2.1 −21.4 ± 1.6 −18.0 ± 1.1 −13.5 ± 1.8 −25.1 ± 2.6 −10.2 ± 1.6
ΔEintc −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0 −0.0 ± 0.0
ΔEgasd −87.2 ± 2.9 −67.2 ± 3.4 −33.2 ± 3.9 −38.2 ± 3.9 −34.0 ± 2.9 −34.9 ± 3.1 −22.3 ± 2.5 −37.2 ± 3.6 −22.3 ± 2.3
ΔGnpsolve −7.6 ± 0.3 −5.9 ± 0.2 −2.7 ± 0.2 −21.6 ± 1.8 −20.9 ± 0.7 −17.3 ± 1.0 −14.8 ± 0.7 −22.7 ± 1.6 −13.1 ± 1.2
ΔGpsolvf 36.7 ± 1.7 26.9 ± 1.4 5.3 ± 0.6 22.8 ± 0.9 22.6 ± 1.1 20.3 ± 1.3 15.1 ± 0.7 8.2 ± 0.6 6.0 ± 0.7
ΔGsolvg 29.1 ± 1.6 20.9 ± 1.2 2.5 ± 0.4 1.2 ± 0.1 1.8 ± 0.2 7.0 ± 0.8 1.7±0.2 −14.5 ± 0.7 −7.2 ± 0.8
ΔGeleh 36.7 ± 1.7 26.8 ± 1.4 5.3 ± 0.6 10.7 ± 0.3 10.0 ± 0.5 7.5 ± 0.5 6.4 ± 0.3 −3.8 ± 0.3 −6.1 ± 0.2
ΔGbindingi −58.1 ± 2.5 −46.3 ± 2.8 −30.7 ± 3.6 −37.0 ± 3.6 −32.3 ± 2.9 −31.9 ± 3.2 −26.0 ± 2.3 −51.7 ± 3.8 −29.5 ± 2.3

aNon-bonded electrostatic energy as calculated by the MM force field.

bNon-bonded van der walls contribution from MM force field.

cInternal energy arising from bond, angle, and dihedral terms in the MM force field.

dTotal gas phase energy.

eNonpolar contribution to the solvation free energy.

fPolar contribution to the solvation free energy calculated.

gSolvation free energy;

hTotal electrostatic energy contribution to the binding energy.

IBinding energy ΔEgas = ΔEele + ΔEvdw + ΔEint, ΔGsolv = ΔGnpsolv + ΔGpsolv ΔGele = ΔEele + ΔGpsolv, ΔGbinding = ΔEgas + ΔGsolv.