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. 2016 Nov 21;47:117. doi: 10.1186/s13567-016-0399-9

Table 3.

Nucleotide and protein BLAST analysis of the IVI-1173 sequence

Genome region Nucleotide BLAST Protein BLAST
Closest strain Accession number Origin Year Nta Closest strain Accession number Origin Year AAb
Full length LV M96262 Netherlands 1993 89 N.a.c N.a. N.a. N.a. N.a.
5′ UTR DK-1992 KC862566 Denmark 1992 97 N.a. N.a. N.a. N.a. N.a.
ORF 1a LV M96262 Netherlands 1993 88 LV M96262 Netherlands 1993 89
ORF 1b CReSA-3266 JF276434 Germany 1996 90 LV JF276434 Spain 2011 96
ORF 2 LV M96262 Netherlands 1993 92 SD-01-07 AAR32995 USA 2003 96
ORF 2b DK-2012-01-05-2 KC862574 Denmark 2012 96 14432/2011 ALH24924 Hungary 2011 100
ORF 3 E38 KT033457 South Korea 2007 89 Sp-28a AEM00458 Spain 2011 86
ORF 4 Sp-16a JF730930 Spain 2011 85 Sp-29a AEM00498 Spain 2011 87
ORF 5 BH 95/10-08 JN651737 Germany 2002 93 BH 95/10-08 JN651737 Germany 2002 95
ORF 5a K09-1351 JQ656126 Korea 2009 99 13V117 ALO24147 Belgium 2013 98
ORF 6 BH 95/10-08 JN651718 Germany 2002 93 469-05 AFH96401 UK 2005 96
ORF 7 Be1 L77914 UK 1995 96 LA2 AGT28447 Austria 2008 96
3′ UTR DK-2003-7-2 KC862572 Denmark 2003 98 N.a. N.a. N.a. N.a. N.a.

aPercentage of nucleotides identity.

bPercentage of amino acid identity.

cNot applicable.