Table 3.
Genome region | Nucleotide BLAST | Protein BLAST | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Closest strain | Accession number | Origin | Year | Nta | Closest strain | Accession number | Origin | Year | AAb | |
Full length | LV | M96262 | Netherlands | 1993 | 89 | N.a.c | N.a. | N.a. | N.a. | N.a. |
5′ UTR | DK-1992 | KC862566 | Denmark | 1992 | 97 | N.a. | N.a. | N.a. | N.a. | N.a. |
ORF 1a | LV | M96262 | Netherlands | 1993 | 88 | LV | M96262 | Netherlands | 1993 | 89 |
ORF 1b | CReSA-3266 | JF276434 | Germany | 1996 | 90 | LV | JF276434 | Spain | 2011 | 96 |
ORF 2 | LV | M96262 | Netherlands | 1993 | 92 | SD-01-07 | AAR32995 | USA | 2003 | 96 |
ORF 2b | DK-2012-01-05-2 | KC862574 | Denmark | 2012 | 96 | 14432/2011 | ALH24924 | Hungary | 2011 | 100 |
ORF 3 | E38 | KT033457 | South Korea | 2007 | 89 | Sp-28a | AEM00458 | Spain | 2011 | 86 |
ORF 4 | Sp-16a | JF730930 | Spain | 2011 | 85 | Sp-29a | AEM00498 | Spain | 2011 | 87 |
ORF 5 | BH 95/10-08 | JN651737 | Germany | 2002 | 93 | BH 95/10-08 | JN651737 | Germany | 2002 | 95 |
ORF 5a | K09-1351 | JQ656126 | Korea | 2009 | 99 | 13V117 | ALO24147 | Belgium | 2013 | 98 |
ORF 6 | BH 95/10-08 | JN651718 | Germany | 2002 | 93 | 469-05 | AFH96401 | UK | 2005 | 96 |
ORF 7 | Be1 | L77914 | UK | 1995 | 96 | LA2 | AGT28447 | Austria | 2008 | 96 |
3′ UTR | DK-2003-7-2 | KC862572 | Denmark | 2003 | 98 | N.a. | N.a. | N.a. | N.a. | N.a. |
aPercentage of nucleotides identity.
bPercentage of amino acid identity.
cNot applicable.