Table 5.

Functions more expressed in LGOoe sepals than in either lgo-2 or atml1-3 sepals.

GO term	p-value	Gene count
Systemic acquired resistance [GO:0009627]	1.03862e-10	14
Response to virus [GO:0009615]	1.66036e-07	9
Response to fungus [GO:0009620]	2.53993e-05	15
Response to oxidative stress [GO:0006979]	6.63141e-05	36
Camalexin binding [GO:2001147]	0.000173634	2
Quercitrin binding [GO:2001227]	0.000173634	2
Chitin binding [GO:0008061]	0.00020204	4
Indole glucosinolate biosynthetic process [GO:0009759]	0.000217908	2
Cellular response to hypoxia [GO:0071456]	0.000461928	5
Positive regulation of cell death [GO:0010942]	0.00310496	2

GO term describes functions significantly overrepresented among genes that were both more strongly expressed in LGOoe sepals than in lgo-2 sepals, and more strongly expressed in LGOoe sepals than in atml-1 sepals, but did not significantly change expression either between LGOoe versus LGOoe atml1-3 or between LGOoe atml1-3 versus atml1-3. p-value is given for the most significant genotypic change associated with each GO term, which sometimes involved genotypic changes other than LGOoe versus lgo-2 or LGOoe versus atml1-3. Gene count is given for the number of genes that are associated with the GO term, and that also significantly change expression in a GO term-associated genotypic or batch change; in other words, for genes that are responsible for a GO term being associated with a given change of gene activity. Full details of this GO term subset are given in Supplementary File S08.