TABLE 2.
L. monocytogenes isolates from food, environment, and patients
| Source | Sample identifier | Serotype | PFGE profile (AscI/ApaI)a | NCBI accession no. or SRA identifier |
|---|---|---|---|---|
| Illinois patient | PNUSAL000957 | IVb-v1 | AscP0/ApaP0 | SRR1562157 |
| South Carolina patient | PNUSAL000730 | IVb-v1 | AscP0/ApaP0 | SRR1393979 |
| Massachusetts patient | PNUSAL000870 | IVb-v1 | AscP0/ApaP0 | SRR1534987 |
| Minnesota patient | PNUSAL001024 | IVb-v1 | AscP0/ApaP0 | SRR1597487 |
| Nectarineb | CFSAN023085 | IVb-v1 | AscP0/ApaP0 | SRR1554259 |
| CFSAN023086 | IVb-v1 | AscP0/ApaP0 | SRR1554256 | |
| Yellow nectarine, organic | CFSAN023490 | 1/2b | NA | SRR1553725 |
| CFSAN023476 | 1/2b | AscP1/ApaP1 | SRR1553871 | |
| CFSAN023477 | 1/2b | AscP2/ApaP2 | SRR1553850 | |
| CFSAN023489 | IVb-v1 | AscP0/ApaP0 | SRR1553739 | |
| CFSAN023491 | IVb-v1 | AscP0/ApaP0 | SRR1553882 | |
| CFSAN023506 | IVb-v1 | AscP0/ApaP0 | SRR1553851 | |
| CFSAN023475 | IVb-v1 | AscP0/ApaP0 | SRR1553866 | |
| CFSAN023478 | IVb-v1 | AscP0/ApaP0 | SRR1553750 | |
| Yellow nectarine | CFSAN023457 | 1/2b | AscP2/ApaP2 | SRR4090659 |
| White nectarine cv. 1 | CFSAN023473 | IVb-v1 | AscP0/ApaP0 | SRR1553779 |
| CFSAN023472 | IVb-v1 | AscP0/ApaP0 | SRR1553855 | |
| White nectarine cv. 2 | CFSAN023459 | 1/2b | AscP1/ApaP6 | NZ_CP014252.1 |
| CFSAN023488 | 1/2b | NA | SRR1553796 | |
| CFSAN023879 | 1/2b | AscP1/ApaP6 | SRR1574290 | |
| CFSAN023474 | IVb-v1 | AscP0/ApaP0 | SRR1553906 | |
| CFSAN023458 | IVb-v1 | AscP0/ApaP0 | SRR1556285 | |
| CFSAN023460 | 1/2b | AscP2/ApaP2 | SRR1556287 | |
| Yellow peach, organic | CFSAN023880 | 1/2b | AscP1/ApaP6 | SRR1574296 |
| CFSAN023462 | IVb-v1 | AscP0/ApaP0 | SRR1556292 | |
| CFSAN023463 | IVb-v1 | AscP0/ApaP0 | NZ_CP012021.1 | |
| CFSAN023464 | IVb-v1 | AscP0/ApaP0 | SRR1556294 | |
| CFSAN023465 | IVb-v1 | AscP0/ApaP0 | SRR1556293 | |
| CFSAN023466 | IVb-v1 | AscP0/ApaP0 | SRR1556289 | |
| White peach | CFSAN023492 | IVb-v1 | NA | SRR1553856 |
| CFSAN023505 | 1/2b | NA | SRR1553784 | |
| CFSAN023484 | IVb-v1 | AscP0/ApaP0 | SRR1553821 | |
| CFSAN023495 | IVb-v1 | NA | SRR1553791 | |
| CFSAN023496 | IVb-v1 | NA | SRR1553816 | |
| CFSAN023498 | IVb-v1 | NA | SRR1553788 | |
| CFSAN023500 | IVb-v1 | NA | SRR1553907 | |
| CFSAN023483 | IVb-v1 | AscP0/ApaP0 | SRR1553773 | |
| CFSAN023503 | IVb-v1 | NA | SRR1553792 | |
| CFSAN023507 | IVb-v1 | NA | SRR1553827 | |
| CFSAN023508 | IVb-v1 | NA | SRR1553774 | |
| CFSAN023479 | IVb-v1 | AscP0/ApaP0 | SRR1553797 | |
| CFSAN023480 | IVb-v1 | AscP0/ApaP0 | SRR1553820 | |
| CFSAN023481 | IVb-v1 | AscP0/ApaP0 | SRR1553798 | |
| CFSAN023482 | IVb-v1 | AscP0/ApaP0 | SRR1553826 | |
| CFSAN023497 | IVb-v1 | NA | SRR1553756 | |
| CFSAN023499 | IVb-v1 | NA | SRR1553804 | |
| CFSAN023501 | IVb-v1 | NA | SRR1566225 | |
| CFSAN023502 | IVb-v1 | NA | SRR1553840 | |
| CFSAN023504 | IVb-v1 | NA | SRR1553867 | |
| CFSAN023493 | IVb-v1 | NA | SRR1553764 | |
| CFSAN023494 | IVb-v1 | NA | SRR1553740 | |
| White peach organic | CFSAN023469 | IVb-v1 | AscP0/ApaP0 | SRR1556291 |
| CFSAN023470 | IVb-v1 | AscP0/ApaP0 | SRR1556297 | |
| CFSAN023471 | IVb-v1 | AscP0/ApaP0 | SRR1556295 | |
| CFSAN023882 | 1/2b | AscP2/ApaP2 | SRR1574321 | |
| CFSAN023881 | 1/2b | AscP2/ApaP2 | SRR1574272 | |
| CFSAN023468 | IVb-v1 | AscP0/ApaP0 | SRR1556290 | |
| CFSAN023467 | IVb-v1 | AscP0/ApaP0 | SRR1556296 | |
| Environment | CFSAN024089 | IVb-v1 | AscP0/ApaP0 | SRR1571515 |
| CFSAN024077 | IVb-v1 | AscP0/ApaP0 | SRR1571519 | |
| CFSAN024082 | IVb-v1 | AscP0/ApaP0 | SRR1571539 | |
| CFSAN024090 | 1/2b | AscP2/ApaP4 | SRR1571543 | |
| CFSAN024081 | 1/2b | AscP2/ApaP2 | SRR1571521 | |
| CFSAN024083 | 1/2b | AscP3/ApaP3 | SRR1571546 | |
| CFSAN024087 | 1/2b | AscP2/ApaP2 | SRR1571523 | |
| CFSAN024084 | 1/2b | AscP1/ApaP1 | SRR1571540 | |
| CFSAN024092 | 1/2b | AscP2/ApaP2 | SRR1571544 | |
| CFSAN024091 | 1/2b | AscP3/ApaP3 | SRR1571525 | |
| CFSAN024088 | 1/2b | AscP4/ApaP3 | SRR1571524 | |
| CFSAN024086 | 1/2b | AscP2/ApaP2 | SRR1571522 | |
| CFSAN024079 | 1/2b | AscP2/ApaP2 | SRR1571520 | |
| CFSAN024078 | 1/2b | AscP2/ApaP4 | SRR1571538 | |
| CFSAN024080 | 1/2b | AscP3/ApaP5 | SRR1571514 | |
| CFSAN024085 | 1/2b | AscP2/ApaP2 | SRR1571542 | |
| CFSAN024093 | 1/2b | AscP5/ApaP7 | SRR1571545 |
a
NA, PFGE information not available (i.e., not performed).
b
Variety information not available.