TABLE 1.
Subtype-specific HG arrangement of NCL1, NCL2, NCL3, NCL7, and NCL8a
| Subtype-specific gene type | Presence of HG in subtype |
||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCL1 |
NCL2 |
NCL3 |
NCL7 |
NCL8 |
|||||||||||||||||||
| 1-1 | 1-2 | 1-3 | 1-4 | 1-5b | 1-6 | 1-7 | 1-8 | 1-9 | 1-10 | 1-11 | 2-1 | 2-2 | 2-3 | 2-4 | 2-5 | 3-1 | 3-2 | 7-1 | 7-2 | 8-1 | 8-2 | 8-3 | |
| HG55 | − | + | + | − | − | + | − | − | + | + | − | + | − | − | + | − | / | / | / | / | / | / | / |
| HG292 | + | + | + | + | + | + | + | + | + | + | + | + | + | − | + | + | / | / | / | / | / | / | / |
| HG293 | − | + | − | − | − | + | − | + | − | − | − | − | − | − | + | + | / | / | / | / | / | / | / |
| HG294 | − | + | − | − | − | + | − | + | − | − | − | − | − | − | + | + | / | / | / | / | / | / | / |
| HG332 | − | − | − | − | − | − | − | − | − | + | − | + | − | − | − | − | / | / | / | / | / | / | / |
| HG312 | + | − | + | + | + | − | + | − | + | − | + | / | / | / | / | / | / | / | / | / | / | / | / |
| HG313 | + | − | + | + | + | − | + | − | + | − | + | / | / | / | / | / | / | / | / | / | / | / | / |
| HG314 | + | − | + | + | + | − | + | − | − | − | − | / | / | / | / | / | / | / | / | / | / | / | / |
| HG315 | + | − | + | + | + | − | + | − | − | − | − | / | / | / | / | / | / | / | / | / | / | / | / |
| HG329 | + | − | − | − | − | − | + | − | − | − | − | / | / | / | / | / | / | / | / | / | / | / | / |
| HG354 | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | − | + | / | / | / |
| HG355 | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | − | + | / | / | / |
| HG23 | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | / | − | + | − |
| Transposase genesc | − | − | − | − | − | + | + | − | − | − | − | / | / | / | / | / | − | + | / | / | − | − | + |
a
+, positive; −, negative; /, no need for detection.
b
The PCR product size of HG292 in NCL1-5 is 724 bp.
c
Including 4 subtype-specific transposase genes for NCL1-6, NCL1-7, NCL3-2, and NCL8-3, which are listed in Table 2.