TABLE 1.
Sequence processing metrics
| Sample | SRA sample | SRA experiment | SRA run | Total no. of reads | No. of reads retained after QCa | Median read length (bases) | No. of reads retained after ITSx | No. of chimeric reads identified | No. of OTUsb |
|---|---|---|---|---|---|---|---|---|---|
| Mock.A | SRS1648698 | SRX2056713 | SRR4070107 | 972,843 | 76,842 | 201 | 76,244 | 8 | 21 |
| Mock.B | SRS1648691 | SRX2056697 | SRR4070093 | 1,025,155 | 200,436 | 208 | 199,600 | 35 | 21 |
| TKN0051.O.4 | SRS1648565 | SRX2056570 | SRR4069943 | 2,125,478 | 304,383 | 204 | 297,784 | 71 | 1,349 |
| UP1B.M.5 | SRS1648566 | SRX2056569 | SRR4069942 | 1,758,453 | 261,735 | 211 | 252,437 | 49 | 1,339 |
| UP1B.O.5 | SRS1648564 | SRX2056568 | SRR4069941 | 1,060,118 | 190,173 | 207 | 184,451 | 55 | 795 |
| UP3A.M.5 | SRS1648527 | SRX2056531 | SRR4069914 | 1,526,506 | 222,749 | 207 | 218,855 | 59 | 764 |
| UP3A.O.5 | SRS1648182 | SRX2056187 | SRR4069933 | 1,401,263 | 224,421 | 206 | 219,897 | 29 | 1,187 |
| Total | 9,869,816 | 1,480,739 | 1,449,268 | 306 | 2,632 |
QC, quality control.
With abundances of ≥2, i.e., global singletons were removed. Some of the same OTUs occur in multiple samples, hence, the total value in the last row is less than the cumulative total of the other rows.