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. 2016 Nov 21;82(24):7217–7226. doi: 10.1128/AEM.02576-16

TABLE 1.

Sequence processing metrics

Sample SRA sample SRA experiment SRA run Total no. of reads No. of reads retained after QCa Median read length (bases) No. of reads retained after ITSx No. of chimeric reads identified No. of OTUsb
Mock.A SRS1648698 SRX2056713 SRR4070107 972,843 76,842 201 76,244 8 21
Mock.B SRS1648691 SRX2056697 SRR4070093 1,025,155 200,436 208 199,600 35 21
TKN0051.O.4 SRS1648565 SRX2056570 SRR4069943 2,125,478 304,383 204 297,784 71 1,349
UP1B.M.5 SRS1648566 SRX2056569 SRR4069942 1,758,453 261,735 211 252,437 49 1,339
UP1B.O.5 SRS1648564 SRX2056568 SRR4069941 1,060,118 190,173 207 184,451 55 795
UP3A.M.5 SRS1648527 SRX2056531 SRR4069914 1,526,506 222,749 207 218,855 59 764
UP3A.O.5 SRS1648182 SRX2056187 SRR4069933 1,401,263 224,421 206 219,897 29 1,187
Total 9,869,816 1,480,739 1,449,268 306 2,632
a

QC, quality control.

b

With abundances of ≥2, i.e., global singletons were removed. Some of the same OTUs occur in multiple samples, hence, the total value in the last row is less than the cumulative total of the other rows.