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. 2016 Nov 17;167(5):1229–1240.e15. doi: 10.1016/j.cell.2016.10.046
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit monoclonal anti-eEF1A1 antibody Abcam Cat. #ab140632
Rabbit polyclonal anti-uL6 antibody Santa Cruz Cat. #102085; RRID: AB_2182219
Rabbit polyclonal anti-uS9 antibody Santa Cruz Cat. #sc-102087; RRID: AB_2269633

Chemicals, Peptides, and Recombinant Proteins

3XFlag-TEV WT Hbs1l (human) Shao et al., 2013 N/A
3XFlag-TEV H348A Hbs1l-DN (human) Shao et al., 2013 N/A
3XFlag-TEV eRF3a (human) This study N/A
WT eRF1 (human) This study N/A
eRF1(AAQ) (human) Brown et al., 2015b N/A
His-Pelota (human) Shao et al., 2013 N/A
E. coli Poly(A) polymerase New England Biolabs Cat. #M0276L
3X Flag peptide Sigma-Aldrich Cat. #F4799
Anti-Flag M2 affinity resin Sigma-Aldrich Cat. #A2220
Ni-NTA agarose QIAGEN Cat. #30210
Didemnin B This study (Jack Taunton) CAS #77327-05-0
Cycloheximide Sigma-Aldrich Cat. #C4859; CAS #66-81-9
Emetine Calbiochem Cat. #324693; CAS #316-42-7
Anisomycin Sigma-Aldrich Cat. #A9789; CAS #22862-76-6
EasyTag L-[35S]-Methionine Perkin Elmer Cat. #NEG709A005MC
CAP (diguanosine triphosphate cap) New England Biolabs Cat. #S1404L
RNasin Promega Cat. #N251
SP6 polymerase New England Biolabs Cat. #M0207L
Creatine kinase Roche Cat. #127566
Creatine phosphate Roche Cat. #621714
Amino acid kit Sigma Cat. #09416

Deposited Data

80S⋅empty A site density map This study EMDB: 4129
80S⋅aa-tRNA⋅eEF1A density map This study EMDB: 4130
80S⋅eRF1⋅eRF3 density map This study EMDB: 4131
80S⋅eRF1 density map This study EMDB: 4132
80S⋅eRF1⋅ABCE1 (combined) density map This study EMDB: 4133
80S⋅Pelota⋅Hbs1l (truncated mRNA) density map This study EMDB: 4134
80S⋅Pelota⋅Hbs1l (stop mRNA) density map This study EMDB: 4135
80S⋅Pelota⋅Hbs1l (polyA mRNA) density map This study EMDB: 4136
80S⋅Pelota⋅Hbs1l (combined) density map This study EMDB: 4137
80S⋅aa-tRNA⋅eEF1A atomic model This study PDB: 5LZS
80S⋅eRF1⋅eRF3 atomic model This study PDB: 5LZT
80S⋅eRF1 atomic model This study PDB: 5LZU
80S⋅eRF1⋅ABCE1 (combined) atomic model This study PDB: 5LZV
80S⋅Pelota⋅Hbs1l (truncated mRNA) atomic model This study PDB: 5LZW
80S⋅Pelota⋅Hbs1l (stop mRNA) atomic model This study PDB: 5LZX
80S⋅Pelota⋅Hbs1l (polyA mRNA) atomic model This study PDB: 5LZY
80S⋅Pelota⋅Hbs1l (combined) atomic model This study PDB: 5LZZ

Experimental Models: Cell Lines

HEK293T ATCC CRL-3216

Experimental Models: Organisms/Strains

E. coli BL21 (DE3) Thermo Fisher C600003
E. coli BL21 (DE3) pLysS Thermo Fisher C606003

Recombinant DNA

pcDNA 3XFlag-TEV WT Hbs1l Shao et al., 2013 N/A
pcDNA 3XFlag-TEV H348A Hbs1l Shao et al., 2013 N/A
pcDNA 3XFlag-TEV eRF3a This study N/A
pRSETA 6XHis-TEV eRF1 This study N/A
pRSETA 6XHis-TEV eRF1(AAQ) Brown et al., 2015b N/A
pSP64 3XFlag VHP Sec61-UGA(68) Brown et al., 2015b N/A
pSP64 3XFlag VHP Sec61-68 Shao et al., 2013 N/A
pSP64 3XFlag KRas This study N/A
Primer: SP64 5′ Fwd: TCATACACATACGATTTAGG Sharma et al., 2010 N/A
Primer: SP64 Rev: CAATACGCAAACCGCCTC Sharma et al., 2010 N/A
Primer: Val68 Rev: AACTTTGAGCCCAGGTGAATC Shao et al., 2013 N/A

Software and Algorithms

EPU software FEI https://www.fei.com/software/epu/
Motioncorr Li et al., 2013 http://cryoem.ucsf.edu/software/driftcorr.html
Gctf v0.5 Zhang, 2016 http://www.mrc-lmb.cam.ac.uk/kzhang/Gctf/
RELION v1.4 Scheres, 2015 http://www2.mrc-lmb.cam.ac.uk/relion
ResMap v1.1.4 Kucukelbir et al., 2014 http://resmap.sourceforge.net/
Coot v0.8 Emsley et al., 2010 http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
REFMAC v5.8 Murshudov et al., 2011 https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/refmac.html
MolProbity v4.3 Chen et al., 2010 http://molprobity.biochem.duke.edu/
Phenix.elbow dev-2499 Adams et al., 2010 http://www.phenix-online.org/documentation/reference/elbow.html
UCSF Chimera v1.10.2 Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/
PyMOL v1.7 Schrödinger, LLC http://www.pymol.org

Other

RRL in vitro translation mix Sharma et al., 2010 N/A
TransIT 293 Mirus MIR 2705