Table 2.
Ligands | Zinc ligand | Complex stoichiometryb | Donors c | Apparent dissociation constant (Kd) | pKd | Competitivity Index (−logCI)a | References |
---|---|---|---|---|---|---|---|
pH buffers | Tris | ZnL | NO∗ | 3.29 × 10−2 M | 1.48 | 1.48 | [110] |
Bis-Tris | ZnL | NO∗ | 5.03 × 10−3 M | 2.30 | 2.30 | [111] | |
Bis-Tris propane | ZnL | NO∗ | 1.19 × 10−4 M | 2.93 | 3.32 | [112] | |
ZnL2 | N2O2∗ | 2.15 × 10−6 M2 | 5.66 | ||||
Bicine | ZnL | NO∗ | 7.50 × 10−5 M | 4.12 | 4.39 | [88] | |
ZnL2 | N2O2∗ | 3.12 × 10−7 M2 | 6.51 | ||||
Tricine | ZnL | NO∗ | 6.47 × 10−5 M | 4.19 | 4.19 | [89] | |
Reductants | TCEP | ZnL | O3P | 3.29 × 10−3 M | 3.29 | 3.29 | [93] |
β-Mercaptoethanol | Zn2L3-Zn6L15 | S2–S4 (S4) | n.c. | n.c. | 3.60d | [92] | |
DTT | ZnL2, Zn3L4 (ZnL) | S4 (S4) | 2.83 × 10−10 M2 | 9.55 | 8.32 | [90] | |
DTBA | ZnL2 (ZnL, Zn2L3) | S4 (S4) | 5.38 × 10−13 M2 | 12.27 | 9.29 | [91] | |
Carboxylic acids | α-Ketoglutaric acid | ZnL, ZnL2 | O2, O4 | ∼2 × 10−2 M2 | ∼1.7 | 1.13d | [113] |
Pyruvic acid (pyruvate) | ZnL, ZnL2 | O2, O4 | ∼2 × 10−3 M2 | ∼2.7 | 1.26d | [114] | |
Succinic acid (succinate) | ZnL | O2 | 2.54 × 10−2 M | 1.60 | 1.60 | [115] | |
Glutaric acid (glutarate) | ZnL | O2 | 2.52 × 10−2 M | 1.60 | 1.60 | [115] | |
Lactic acid (lactate) | ZnL | O2 | 1.38 × 10−2 M | 1.86 | 1.86 | [116] | |
Lipoic acide | ZnL | O2 | 3.7 × 10−3 M | 2.43 | 2.43 | [117] | |
Malic acid (malate) | ZnL | O2 | 1.52 × 10−4 M | 3.82 | 3.82f | [118] | |
Folic acid (folate) | ZnL2 | N2O2 | 2.2 × 10−6 M2 | 5.67 | 2.84g | [119] | |
Oxalic acid (oxalate) | ZnL | O2 | 3.16 × 10−4 M | 3.50 | 3.50 | [120] | |
Orotic acid (orotate) | ZnL | NO | 2.20 × 10−4 M | 3.66 | 4.80f | [121] | |
ZnL2 | N2O2 | 2.40 × 10−8 M2 | 7.62 | ||||
Dipicolinic acid | ZnL | NO2 | 5.74 × 10−4 M | 3.24 | 8.70h | [122] | |
ZnL2 | N2O4 | 1.33 × 10−12 M2 | 11.88 | ||||
Citric acid (citrate) | ZnL2 (ZnL) | O6 (O6) | 1.17 × 10−12 M2 | 11.93 | 8.93 | [41] | |
Amino acids | Glutamic acid (glutamate) | ZnL | NO | 2.85 × 10−3 M | 2.54 | 2.70 | [66] |
ZnL2 | N2O2 | 2.18 × 10−5 M2 | 4.66 | ||||
Glycine | ZnL | NO | 2.40 × 10−3 M | 2.62 | 2.82 | [87] | |
ZnL2 | N2O2 | 1.29 × 10−5 M2 | 4.89 | ||||
Aspartic acid (aspartate) | ZnL | NO | 3.92 × 10−4 M | 3.40 | 3.54 | [44] | |
ZnL2 | N2O2 | 4.13 × 10−6 M2 | 5.38 | ||||
N-Ac-Cys | ZnL2 (ZnL) | O2S2 (OS) | 6.77 × 10−8 M2 | 7.17 | 4.06 | [123] | |
Histidine | ZnL | N2O | 3.22 × 10−4 M | 3.49 | 5.48 | [40] | |
ZnL2 | N4O2 | 3.05 × 10−9 M2 | 8.52 | ||||
Cysteine | ZnL2 (ZnL) | N2S2 (NS) | 9.77 × 10−12 M2 | 11.01 | 7.84i | [124] | |
d-penicillamine | ZnL2 (ZnL) | N2S2 (NS) | 2.81 × 10−12 M2 | 11.55 | 8.38i | [124] | |
Nucleotides | AMP | ZnL | NO | 1.84 × 10−3 M | 2.73 | 2.73 | [125] |
ADP | ZnL | NO2 | 9.73 × 10−5 M | 4.38 | 4.38 | [125] | |
ATP | ZnL | NO3 | 7.68 × 10−6 M | 5.11 | 5.11 | [125] | |
Redox buffers | GSSG | ZnL (Zn2L) | N2O2 (NO) | 5.3 × 10−5 M | 4.28 | 4.28 | [66] |
GSH | ZnL | NOS | 1.65 × 10−4 M | 3.78 | 5.16 | [126] | |
ZnL2 | NOS2 | 8.74 × 10−9 M2 | 8.06 | ||||
Bacillithiol | ZnL | NSO2∗ | 4.0 × 10−6 M | 5.40 | 9.05j | [73] | |
ZnL2 | N2S2∗ | 5.38 × 10−13 M2 | 12.27 | ||||
Others | Tetracycline | ZnL | O2 | 6.77 × 10−3 M | 2.17 | 2.17f | [127] |
Carnosine | ZnL | NO | 4.55 × 10−3 M | 2.34 | 2.34 | [128] | |
Oxytetracycline | ZnL | O2 | 2.24 × 10−3 M | 2.65 | 2.65f | [127] | |
Diphosphate (pyrophosphate) | ZnL | O2 | 1.91 × 10−3 M | 2.72 | 2.72 | [32] | |
Gentamicin C1a | ZnL | NO∗ | 1.60 × 10−3 M | 2.79 | 2.79 | [129] | |
Histamine | ZnL | N2 | 2.98 × 10−3 M | 2.53 | 2.96 | [130] | |
ZnL2 | N4 | 5.41 × 10−6 M2 | 5.27 | ||||
Triphosphate | ZnL | O3 | 1.35 × 10−7 M | 6.87 | 6.87 | [33] | |
Tetraphosphate | ZnL | O4∗ | 5.72 × 10−8 M | 7.24 | 7.24 | [34] | |
Pyrithione | ZnL2k (ZnL) | O2S2k (OS) | 5.0 × 10−12 M2 | 11.30 | 8.30 | [76] | |
Phytic acid (phytate) | ZnL | O5∗ | 3.7 × 10−11 M | 10.44 | 10.44 | [35] | |
Nicotianamine | ZnL | N3O3 | 1.60 × 10−11 M | 10.48 | 10.48 | [82], [131] |
CI is the apparent dissociation constant of ZnZ complex (zinc complex of theoretical molecule Z), such that [ZnZ] = Σijk [ZniHjLk], at a given overall component concentration. The concentrations of Z were set at 2 mM, and those of Zn2+ at 0.5 mM.
Complexes in brackets are the minor species.
Donors in brackets refer to complex as minor species.
I = 0.5 M.
Dihydrolipoic acid (reduced form of lipoic acid) is assumed to bind Zn2+ more tightly.
37 °C, I = 0.15 M.
20 °C, I = 0.01 M.
20 °C.
I = 0.2 M.
Apparent dissociation constant determined at pH 7.7, I = 0.15 M.
Complex in crystals present as dinuclear Zn2L4 species with S3O2 donors. n.c. – not calculated. Asterisks denote putative donor atoms.