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Transcript comparison after gene expression analysis.
| Days post-inoculation | Number of transcripts with expressiona | Number of differentially expressed transcripts (q < 0.05)b | upregulated (q < 0.05)b | downregulated (q < 0.05)b |
|---|---|---|---|---|
| 2 | 38,768 | 0 | 0 | 0 |
| 4 | 38,302 | 103 | 48 | 55 |
| 8 | 38,407 | 125 | 79 | 46 |
| 18 | 38,616 | 1043 | 1008 | 35 |
aTranscripts where the minimum number of read alignments (n = 10) allowed significance testing between the two conditions. bAfter correction for multiple testing (Benjamini-Hochberg).
