Table 3.
Log2-fold change (water vs. inoculum) agreement between RNA-seq and qRT-PCR.
| Description |
Day 2 |
Day 4 |
Day 8 |
Day 18 |
|||||
|---|---|---|---|---|---|---|---|---|---|
| Flax gene ID | Gene | RNA-seq | qRT-PCR | RNA-seq | qRT-PCR | RNA-seq | qRT-PCR | RNA-seq | qRT-PCR |
| Lus10015351 | Nitrate transporter | 0.0 | 0.1 | -0.9 | -0.6 | -1.6 | -2.4 | -3.5 | -2.7 |
| Lus10021936 | Basic 7s globulin-like | -1.0 | 0.4 | -1.8 | -1.4 | -2.1 | -3.0 | -1.2 | -1.4 |
| Lus10016424 | Conserved protein similar to AER92600 | -2.4 | -1.8 | -2.9 | -2.5 | -2.1 | -1.9 | -0.5 | -1.0 |
| Lus10005393 | Polyphenol oxidase | 1.9 | 2.9 | -0.7 | 0.1 | -1.8 | -1.9 | 1.0 | 1.6 |
| Lus10039487 | Auxin-responsive protein iaa7 | -0.1 | 0.0 | 0.3 | 0.2 | -0.3 | -0.9 | -1.3 | -2.2 |
| Lus10041830 | Chitinase | -0.1 | 0.4 | 0.3 | 0.7 | 0.3 | 0.8 | 3.2 | 2.0 |
| Lus10004808 | Leucoanthocyanidin dioxygenase | 0.1 | 0.9 | -0.4 | 0.1 | 2.1 | 2.1 | 6.7 | 2.1 |
| Lus10020826 | Peroxidase | 0.4 | 0.8 | -0.4 | 0.2 | 0.1 | -0.4 | 2.6 | 1.0 |
| Lus10019060 | Glycosyl hydrolase family protein with chitinase insertion domain | 1.4 | 2.5 | 0.1 | 0.3 | -0.5 | 0.2 | 4.3 | 1.5 |
| Lus10008930 | Major latex protein | 0.3 | 0.7 | -0.3 | -0.7 | 0.5 | -0.2 | 1.7 | 1.6 |
| Lus10027702 | Eukaryotic translation initiation factor 3 subunit c | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | -0.2 | -0.2 | 0.0 |
| Lus10025438 | Transcription elongation factor 1 | -0.1 | 0.0 | 0.1 | 0.0 | 0.0 | -0.1 | 0.1 | 0.2 |
| Lus10015458 | DNA-directed RNA polymerase I subunit rpa12 | 0.0 | 0.1 | 0.0 | -0.1 | 0.0 | -0.1 | 0.0 | 0.1 |
| Lus10005425 | Trehalose-6-phosphate synthase | -0.1 | -0.2 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | 0.2 |
| Lus10038622 | Eukaryotic translation initiation factor 3 subunit l-like | 0.1 | 0.1 | 0.0 | 0.1 | 0.0 | -0.1 | -0.3 | -0.1 |