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. 2016 Nov 10;2016:9127857. doi: 10.1155/2016/9127857

Table 2.

Data collection and refinement statistics. Values in parentheses are for the highest resolution shell.

Apo Holo-1 Holo-2 Holo-3 Ternary complex
PDB entry 5EEB 5F2C 5EUY 5EXF 5EK6
Data collection
Space group P 21 21 2 P 21 21 2 P 21 21 2 P 21 21 2 P 21 21 2
Cell dimensions
a (Å) 184.24 185.36 184.77 185.59 183.80
b (Å) 207.23 208.30 208.05 208.72 207.85
c (Å) 164.96 163.81 165.40 164.75 166.44
Temperature (K) 100 100 100 100 100
Wavelength (Å) 0.984 0.800 0.970 1.00 0.972
Crystal-to-detector distance (mm) 168.0 300.0 363.1 300.0 386.9
Oscillation range (°) 1.0 0.5 0.1 0.5 0.1
Number of frames 197 720 1120 720 1450
Resolution (°) 29.77–3.04 29.15–1.90 59.06–2.06 90.97–2.19 59.14–2.66
Completeness (%) 98.9 (85.0) 99.8 (99.0) 99.1 (99.0) 98.2 (97.9) 99.34 (100)
R-merge 0.27 (0.76) 0.07 (0.33) 0.10 (0.77) 0.19 (0.73) 0.17 (0.77)
I/σ 7.7 (2.3) 13.4 (1.6) 8.3 (1.6) 5.3 (1.7) 7.3 (1.8)
Redundancy 7.4 4.0 4.1 4.9 5.4
Refinement
R work/R free 0.202/0.256 0.184/0.218 0.196/0.233 0.206/0.245 0.189/0.240
Wilson B-factor (Å2) 43.5 25.0 35.3 22.0 42.0
Number of atoms
 All 30043 34276 33663 33881 30912
 (i) Protein 30043 30690 30355 30382 30054
 (ii) NADP+ 396 408 384 384
 (iii) Isobut. 30
 (iv) Glycerol 6 6
 (v) Water molecules 3184 2900 3109 444
Average B, all atoms (Å2) 35.0 28.0 37.0 27.0 40.0
RMS deviations
 (i) Bond lengths 0.010 0.008 0.008 0.008 0.011
 (ii) Bond angles 1.274 1.021 1.058 1.071 1.197
Ramachandran plot
 Most favorable (%) 97.43 97.34 96.80 96.24 95.41
 Allowed (%) 2.47 2.45 2.86 3.40 3.94
 Outliers (%) 0.1 0.21 0.34 0.37 0.65