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. 2016 Nov 24;6:37237. doi: 10.1038/srep37237

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Copyright © 2016, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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The MathIOmica v.1 input format was redesigned to implement the 10.3+ Wolfram Language improvements to use associations (cf. dictionaries in Python). The data format is termed an OmicsObject, and is an association of associations with common identifiers as inner association keys across multiple samples. It addresses rapid sample identification, measurement and metadata all maintained for user accessibility and additionally accommodates missing values. In addition to the user having control of all aspects of the input data via Query commands on the OmicsObject representing the data, MathIOmica includes specialized functions designed specifically for creating and manipulating an OmicsObject.