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. 2016 Nov 24;7:13637. doi: 10.1038/ncomms13637

Figure 3. Variants difference depending on the reference genome.

Figure 3

Variants (SNVs and small indels) numbers within the regions shared by KOREFs, GRCh38 and GRCh38_C were compared using whole-genome re-sequencing data from three different ethnic groups (Africans: Mandenka, Yoruba, San, Mbuti and Dinka; Caucasians: Sardinian, French and three CEPH/Utah (CEU); East-Asians: Mongolian, two Chinese, two Japanese and five Koreans). (a) Number of homozygous SNVs. (b) Number of homozygous small indels. (c) Number of heterozygous SNVs. (d) Number of heterozygous small indels. (e) The number of variants (referenced by GRCh38 and KOREF_C) at different levels of sharedness. (f) The number of reference-specific variants at different levels of sharedness.