Table 4.
P-values for each model condition and metric for the hypothesis test that P+BAli-Phy outperforms P(default) with respect to alignment accuracy
| Data | Precision | Recall | TC | ||
|---|---|---|---|---|---|
| Indelible M2 | 0.001 | 0.001 | <0.001 | ||
| RNAsim | <0.001 | 0.001 | <0.001 | ||
| Rose L1 | 0.211 | 0.188 | <0.001 | ||
| Rose M1 | 0.473 | 0.298 | <0.001 | ||
| Rose S1 | 0.820 | 0.770 | <0.001 | ||
Values are based on one-sided Student’s T-test for differences between the two methods on each replicate. Bolded values indicate significant differences using a Benjamini-Hochberg procedure to control the false discovery rate at 5 % [33]