Table 1. Characteristics of NRPE1 AGO platforms in angiosperm taxa.
length1 | AGO hooks | average disorder2 | repeat score3 | |||
---|---|---|---|---|---|---|
GW-WG-GWG | ||||||
Am.tricopoda | 538 | 9 | 6 | 10 | 0.71 | + |
Aq.coerulea, a | 628 | 2 | 7 | 4 | 0.59 | +++ |
Aq.coerulea, b | 557 | 9 | 11 | 1 | 0.62 | ++ |
Ar.thaliana | 502 | 1 | 17 | 1 | 0.75 | ++ |
Br.distachyon, a | 508 | 3 | 11 | 2 | 0.73 | ++ |
Br.distachyon, b | 255 | 2 | 1 | 0 | 0.63 | – |
Ci.clementina | 495 | 5 | 13 | 4 | 0.64 | +++ |
Ci.sinensis | 494 | 5 | 13 | 4 | 0.63 | +++ |
Cu.sativus | 576 | 7 | 7 | 5 | 0.69 | + |
Eu.grandis | 442 | 5 | 7 | 3 | 0.72 | + |
Fr.vesca | 610 | 2 | 23 | 2 | 0.72 | ++ |
Gl.max, a | 644 | 3 | 14 | 1 | 0.69 | +++ |
Gl.max, b | 687 | 4 | 12 | 7 | 0.69 | ++ |
Go.raimondii | 551 | 10 | 6 | 3 | 0.64 | +++ |
Li.usitatissimum | 508 | 2 | 4 | 7 | 0.73 | +++ |
Me.truncatula | 573 | 4 | 17 | 1 | 0.74 | +++ |
Mi.guttatus | 690 | 2 | 19 | 8 | 0.74 | +++ |
Or.sativa, a | 533 | 5 | 7 | 2 | 0.73 | ++ |
Or.sativa, b | 241 | 0 | 1 | 0 | 0.61 | – |
Pa.virgatum, a | 518 | 4 | 10 | 1 | 0.70 | + |
Pa.virgatum, b | 234 | 1 | 1 | 0 | 0.50 | – |
Ph.vulgaris | 667 | 4 | 19 | 4 | 0.72 | ++ |
Po.trichocarpa, a | 549 | 7 | 7 | 10 | 0.71 | + |
Po.trichocarpa, b | 266 | 2 | 5 | 2 | 0.59 | – |
Pr.persica | 466 | 1 | 11 | 0 | 0.62 | +++ |
Sa.purpurea | 553 | 8 | 6 | 10 | 0.71 | + |
Se.italica, a | 533 | 3 | 11 | 2 | 0.75 | ++ |
Se.italica, b | 235 | 1 | 1 | 0 | 0.54 | – |
So.bicolor | 268 | 2 | 1 | 0 | 0.58 | – |
So.lycopersicum | 259 | 3 | 4 | 0 | 0.67 | – |
Th.cacao | 440 | 2 | 10 | 2 | 0.55 | ++ |
Vi.vinifera | 446 | 5 | 5 | 3 | 0.69 | + |
Length of AGO platform as measured from the end of the H domain to the beginning of the DeCL domain.
Average disorder based on IUPred predictions for each residue in the AGO platform
–, RADAR score <200; +, RADAR score >200 and T-REKS <0.7; ++, T-REKS 0.7-0.85; +++, T-REKS >0.85 (see Materials and Methods)