Table 1.

The sequenced prophage and Wolbachia genomes.

Prophage	Wolbachia	Phenotype	Host	Common name	Supergroup	Statusa	Region	References
WOcauB1	wCauB	CI	Ephestia kuehniella	moth	B	Unfinished	gp1~gp24	Fujii et al., 2004
WOcauB2							B2gp1~B2gp47	Tanaka et al., 2009
WOcauB3							B3gp1~B3gp46
WONo1	wNo	CI	D. simulans	fruit fly	B	Complete	wNo_01060~wNo_01380	Ellegaard et al., 2013
WONo2							wNo_07250~wNo_07370
WONo3							wNo_09030~wNo_09160
WONo4							wNo_10080~wNo_10280
WORiA	wRi	CI	D. simulans	fruit fly	A	Complete	WRi_012450~WRi_012670	Klasson et al., 2009
WORiB1							WRi_005400~WRi_005720
WORiB2							WRi_010060~WRi_010380
WORiC							WRi_006880~WRi_007250
WOVitA1	wVitA	CI	Nasonia vitripennis	jewel wasp	A	Unfinished	VA1gp1~VA1gp51	Kent et al., 2011b
WOVitA2							VA2gp1~VA2gp39
WOVitA4							VA4gp1~VA4gp28
WOVitB	wVitB	CI	N. vitripennis	jewel wasp	B	Unfinished	HQ906665	Kent et al., 2011b
WOSol1	wCs	Unknown	Ceratosolen solmsi	fig wasp	A	Unfinished	So0001~So0025	Wang et al., 2013
WOSol2							So0026~So0029
WOMelA	wMel	CI	Drosophila melanogaster	fruit fly	A	Complete	WD0259~WD0292	Wu et al., 2004
WOMelB1							WD0565~WD0610
WOMelB2							WD0633~WD0644
WOMelPop (partial)	wMelPop	CI	D. melanogaster	fruit fly	A	Unfinished	contig_00005_6 1056~49398	Woolfit et al., 2013
WOSuz1	wlb_suzi	Unknown	D. suzukii strain DS-VAL-F5	fruit fly	A	Unfinished	contig005 19344~41162	Siozios et al., unpublished
WOSuz2							contig014 35799~42456
WOSuz3							contig024
WOAuA	wAu	non CI	D. simulans	fruit fly	A	Complete	WPWAU0631~WPWAU0666	Sutton et al., 2014
WOAuB							WPWAU0282~WPWAU0318
WOMol1	wPipMol	CI	C. molestus	mosquito	B	Unfinished	WPM_000998~WPM_001001	Pinto et al., 2013
WOMol2							WPM001007c~WPM_001048
WOMol3							WPM_001076~WPM_001092
WOMol4							WPM001101c~WPM_001163
WOMol5							WPM_001164~WPM_001190
WOHa1	wHa	CI	D. simulans	fruit fly	A	Complete	wHa02360~wHa02660	Ellegaard et al., 2013
WOHa2							wHa03390~wHa03840
WOPip1	wPip Pel	CI	Culex pipiens	mosquito	B	Complete	WP0242~WP0272	Klasson et al., 2008
WOPip2							WP0297~WP0322
WOPip3							WP0323~WP0342
WOPip4							WP0411~WP0455
WOPip5							WP1294~WP1340
–	wOo	mutualism	Onchocerca ochengi	nematode	C	Complete	–	Darby et al., 2012
–	wOv	mutualism	O. volvulus	nematode	C	Complete	–	Desjardins et al., 2013
–	wBm	mutualism	Brugia malayi	nematode	D	Complete	–	Foster et al., 2005
–	wCle	mutualism	Cimex lectularius	bug	F	Complete	–	Nikoh et al., 2014
	wAna	CI	D. ananassae	fruit fly	A	Unfinished		Salzberg et al., 2005
	wSim	CI presumed	D. simulans	fruit fly	A	Unfinished		Salzberg et al., 2005
	wMoj	Unknown	D. mojavensis	fruit fly	A	Unfinished		Salzberg et al., 2005
	wUni	Parthenogenesis	Muscidifurax uniraptor	wasp	A	Unfinished		Klasson et al., 2009
WORec A	wRec	CI (male killing)	D. recens (D. subquinaria)	fruit fly	A	Unfinished	WREC0261 ~WREC0285	Metcalf et al., 2014
WORec B							WREC0559 ~WREC 0568
	wGmm	CI	Glossina morsitans	tsetse fly	A	Unfinished		Brelsfoard et al., 2014
	wCoc	Unknown	Dactylopius coccus	cochineal	A	Unfinished		Campana et al., 2015
	wWil	Unknown	D. willistoni	fruit fly	A	Unfinished		Salzberg et al., 2005
	wPip JHB	CI	C. quinquefasciatus JHB	mosquito	B	Unfinished		Salzberg et al., 2009
	wAlbB	CI	Aedes albopictus	mosquito	B	Unfinished		Mavingui et al., 2012
	wDi	Unknown	Diaphorina citri	bug	B	Unfinished		Saha et al., 2012
	wBol1	Male killing	Hypolimnas bolina	butterfly	B	Unfinished		Duplouy et al., 2013
	wWb	Unknown	Wuchereria bancrofti	nematode	D	Unfinished		Desjardins et al., 2013

^aWolbachia genome assembly information.

CI: Cytoplasmic incompatibility. –: None. Blank space: no statistics because of poor genome assembly.