Table 2.
List of genes encoded by 12 Paris chloroplast genomes.
| Category of genes | Group of gene | Name of gene |
|---|---|---|
| Self-replication | Ribosomal RNA genes | rrn4.5, rrn5, rrn16, rrn23 |
| Transfer RNA genes | trnA_UGC∗, trnC_GCA, trnD_GUC, trnE_UUC, trnF_GAA, trnfM_CAU, trnG_GCC, trnG_UCC∗, trnH_GUG, trnI_CAU, trnI_GAU∗, trnK_UUU∗, trnL_CAA, trnL_UAA∗, trnL_UAG, trnM_CAU, trnN_GUU, trnP_UGG, trnQ_UUG, trnR_ACG, trnR_UCU, trnS_GCU, trnS_GGA, trnS_UGA, trnT_GGU, trnT_UGU, trnV_GAC, trnV_UAC∗, trnW_CCA, trnY_GUA | |
| Ribosomal protein (small subunit) | rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps12∗, rps14, rps15, rps16∗, rps18, rps19 | |
| Ribosomal protein (large subunit) | rpl2∗, rpl14, rpl16∗, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 | |
| RNA polymerase | rpoA, rpoB, rpoC1∗, rpoC2 | |
| Translational initiation factor | infA | |
| Genes for photosynthesis | Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ, ycf3∗∗, ycf4 |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of cytochrome | petA, petB∗, petD∗, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF∗, atpH, atpI | |
| Large subunit of Rubisco | rbcL | |
| Subunits of NADH dehydrogenase | ndhA∗, ndhB∗, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Other genes | Maturase | matK |
| Envelope membrane protein | cemA# | |
| Subunit of acetyl-CoA | accD | |
| Synthesis gene | ccsA | |
| ATP-dependent protease | clpP∗∗ | |
| Component of TIC complex | ycf1 | |
| Genes of unknown function | Conserved open reading frames | ycf2, ycf15# |
∗With one intron; ∗∗With two introns; #Pseudogene.