Table 2.
Predicted and previously annotated proteins ≤50 amino acids in Synechocystis 6803
| Start | End | S | L | Locus_tag | Gene | Product | 6714 | A. th. | E. coli |
|---|---|---|---|---|---|---|---|---|---|
| 608828 | 608748 | - | 26 | Chr_ORF_4 | NA | Hypothetical protein | N | N | N |
| 1840846 | 1840926 | + | 26 | Chr_ORF_10 | NA | Hypothetical protein | Y | N | N |
| 160004 | 160093 | - | 29 | sml0004 | petN | Cytochrome b 6 f complex subunit VIII | Y | Y | N |
| 586617 | 586525 | - | 30 | Chr_ORF_3 | NA | Hypothetical protein | Y | N | N |
| 2414584 | 2414679 | + | 31 | smr0001 | psbT, ycf8 | Photosystem II PsbT protein | Y | Y | N |
| 467201 | 467296 | + | 31 | smr0005 | psaM | Photosystem I subunit XII | Y | N | N |
| 1148230 | 1148325 | - | 31 | Norf4 | norf4 | Norf4 | Y | N | N |
| 1643502 | 1643600 | - | 32 | ssl3803 | petL | Cytochrome b 6 f complex subunit PetL | Y | N | N |
| 3097275 | 3097379 | + | 34 | smr0002 | NA | Transposase, fragment | Y | N | N |
| 146724 | 146831 | - | 35 | sml0003 | psbM | Photosystem II reaction center M protein | Y | Y | N |
| 468997 | 468887 | - | 36 | Chr_ORF_2 | NA | Hypothetical protein | Y | N | N |
| 3118192 | 3118302 | + | 36 | smr0003 | petM | Cytochrome b 6 f complex subunit PetM | Y | N | N |
| 1606868 | 1606978 | + | 37 | hliR1 | hliR1 | HliR1 | Y | N | N |
| 473802 | 473915 | - | 37 | sml0009 | NA | VapC fragment | Y | N | Y |
| 32865 | 32978 | - | 37 | ssl5031 | NA | NA | Y | N | N |
| 831101 | 831217 | - | 38 | sml0006 | rpl36 | 50S ribosomal protein L36 | Y | Y | Y| |
| 1823570 | 1823686 | + | 38 | smr0010 | petG | Cytochrome b 6 f complex subunit 5 | Y | Y | N |
| 2350140 | 2350256 | - | 38 | sml0001 | psbI | Photosystem II reaction center PsbI protein | Y | Y | N |
| 571084 | 571203 | + | 39 | smr0007 | psbL | Photosystem II PsbL protein | Y | Y | N |
| 571236 | 571355 | + | 39 | smr0008 | psbJ | Photosystem II PsbJ protein | Y | Y | N |
| 1268189 | 1268308 | - | 39 | sml0007 | psbY | Photosystem II protein Y | Y | N | N |
| 2613481 | 2613600 | - | 39 | sml0002 | psbX | Photosystem II PsbX protein | Y | N | N |
| 2816991 | 2817110 | - | 39 | sgl0001 | NA | Hypothetical protein | Y | N | N |
| 3140045 | 3140164 | - | 39 | sll0047 | ycf12 | Psb30, YCF12 | Y | N | N |
| 1687326 | 1687448 | - | 40 | sml0008 | psaJ | Photosystem I subunit IX | Y | Y | N |
| 3458023 | 3458145 | + | 40 | smr0004 | psaI | Photosystem I subunit VIII | Y | Y | N |
| 3188105 | 3188227 | - | 40 | sml0013 | ndhP | NdhP | Y | Y | N |
| 2138496 | 2138621 | + | 41 | Chr_ORF12 | NA | Hypothetical protein | Y | N | N |
| 633626 | 633754 | + | 42 | Chr_ORF5 | NA | Transposase, fragment | Y | N | N |
| 273512 | 273381 | - | 43 | Chr_ORF1 | NA | Hypothetical protein | Y | N | N |
| 1167333 | 1167464 | + | 43 | smr0009 | psbN | Photosystem II PsbN protein | Y | Y | N |
| 570940 | 571074 | + | 44 | smr0006 | psbF | Cytochrome b559 b subunit | Y | Y | N |
| 3067172 | 3067306 | - | 44 | Norf8 | NA | NA | Y | N | N |
| 30142 | 30008 | - | 44 | pSYSA_ORF3 | NA | N terminus of bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; similar short homologs also in other bacteria | Y | N | Y |
| 553065 | 553202 | - | 45 | sml0005 | psbK | Photosystem II PsbK protein | Y | Y | N |
| 1826764 | 1826901 | + | 45 | smr0011 | rpl34 | 50S ribosomal protein L34 | Y | Y | Y |
| 903627 | 903764 | - | 45 | sml0012 | NA | Hypothetical protein | Y | N | N |
| 14477 | 14340 | - | 45 | pSYSM_ORF1 | NA | O-acetyl-N-acetylneuraminate esterase, partial | Y | N | N |
| 1842716 | 1842856 | - | 46 | Norf6 | ndhQ | NdhQ subunit of the NDH-1 L complex | Y | N | N |
| 1141803 | 1141946 | - | 47 | ssl1633 | hliC, scpB | HliC, CAB/ELIP /HLIP superfamily | Y | Y | N |
| 298826 | 298972 | - | 48 | Norf1 | norf1 | Norf1 | Y | N | N |
| 572978 | 573124 | - | 48 | sml0010 | NA | Transposase | Y | N | N |
| 159812 | 159961 | - | 49 | sgl0002 | NA | Hypothetical protein | Y | N | N |
| 2595112 | 2595264 | - | 50 | ssl0090 | NA | Hypothetical protein | Y | N | N |
The start and end positions according to the chromosomal or plasmid sequences in Genbank files (accessions NC_000911, AP004311 and AP004310), the location (S) on the forward (+) or reverse strand (−) and respective length (L; in amino acids) are given, followed by the locus tag ID, gene name and product if assigned. Location on chromosome or one of the plasmids is prefixed by “Chr” or the name of the plasmid. The existence of homologs in Synechocystis 6714, A. thaliana and E. coli is indicated by “Y” for yes or “N” for no. Homologs tagged and detected in this study are highlighted in boldface letters. Names of genes tested in this work are in boldface