Table 2.
Possible SNPs associated with expression changes in response to Aspergillus/aflatoxin. Fold change is the expression in FPKM in seeds not contaminated with Aspergillus or aflatoxin divided by seeds contaminated with Aspergillus or aflatoxin. Other genotypes reflect average fold change and standard deviation. All SNPs are located in a coding region from estimates using FGENESH, a program for predicting genes in genomic DNA sequences (http://www.softberry.com/berry.phtml?topic=index&group=programs&subgroup=gfind).
| Fold Change (FC) | Other Genotype’s FC | Other Genotypes’ Base | Florida 07 Base | Annotation |
|---|---|---|---|---|
| 832.23 | 69.46 ± 147.28 | G | A | Bidirectional sugar transporter |
| 399.89 | 4.85 ± 6.81 | C | T | Beta-galactosidase 3 |
| 147.30 | 4.37 ± 6.99 | C | T | Cannabidiolic acid synthase-like 1 |
| 103.33 | 1.84 ± 0.67 | G | C | Kinesin-like calmodulin-binding protein |
| 26.68 | 1.76 ± 0.83 | A | T | (+)-neomenthol dehydrogenase |
| 23.95 | 1.34 ± 0.70 | C | A | Plasma membrane ATPase 4 |
| 23.41 | 1.59 ± 0.69 | C | G | ATP synthase subunit a, chloroplastic |
| 18.49 | 1.77 ± 1.61 | G | A | Protein argonaute 5 |
| 18.48 | 1.85 ± 0.87 | G | C | Receptor-like protein kinase HSL1 |
| - | - | - | Tifrunner base | - |
| 0.29 | 0.92 ± 1.01 | A | T | Alpha-L-fucosidase 2 |
| 0.37 | 0.84 ± 0.42 | T | C | Cytochrome P450 82C2 |