Table 1. Thermodynamic parameters for the structural formation of dsDNA and gqDNA in the presence of various concentrations of urea or TMAO.
DNA | [Urea] (wt%) | ΔGº37 (kcal mol–1) | ΔH (kcal mol–1) | ΔS (cal) mol–1 K–1 | Tma(°C) |
---|---|---|---|---|---|
In the presence of urea | |||||
dsDNA | 0 | −17.3 | −113 | −307 | 66.4 |
5 | −17.0 | −115 | −317 | 64.9 | |
10 | −16.3 | −119 | −331 | 61.7 | |
15 | −15.8 | −123 | −345 | 59.5 | |
20 | −14.6 | −112 | −313 | 58.0 | |
gqDNA | 0 | −5.15 | −59.2 | −174 | 66.5 |
5 | −4.44 | −57.2 | −170 | 63.1 | |
10 | −3.62 | −50.8 | −152 | 60.8 | |
15 | −2.70 | −42.3 | −128 | 58.2 | |
20 | −2.66 | −46.9 | −143 | 55.7 | |
In the presence of TMAO | |||||
dsDNA | 0 | −17.3 | −113 | −307 | 66.4 |
5 | −18.0 | −117 | −319 | 67.4 | |
10 | −18.5 | −117 | −319 | 69.0 | |
15 | −18.4 | −116 | −316 | 69.0 | |
20 | −18.6 | −116 | −315 | 69.6 | |
30 | −17.9 | −111 | −300 | 68.9 | |
40 | −16.0 | −96.8 | −261 | 66.8 | |
gqDNA | 0 | −5.15 | −59.2 | −174 | 66.5 |
5 | −6.24 | −62.1 | −180 | 71.6 | |
10 | −7.08 | −66.2 | −191 | 74.1 | |
15 | −8.03 | −70.1 | −200 | 77.1 | |
20 | −9.50 | −78.6 | −223 | 79.7 |
The T m values were evaluated with 5 μM DNA concentration.