Skip to main content
. 2016 Nov 7;113(47):13390–13395. doi: 10.1073/pnas.1613825113

Table S1.

Oligonucleotides used in this study

Primer name Primer sequence 5′–3′ Primer description
TG75 TTTCTGCAGGTTAGTGAGATAATATCCTATCC Saci_0177 upstream cloning F primer
TG76 TTATTAATTTTTGTTCTGCTGCACTGAAATCTTTATTTTCAACTTTTATC Saci_0177 upstream cloning R primer
TG77 AGCAGAACAAAAATTAATAAGTGAAGAAGATTTACATCATCATCATCATCATTAAGATTTCCACTGAAGCTAG Saci_0177 downstream cloning F primer
TG78 TTTGGTACCTCTTCAGCGACATCACAAGC Saci_0177 downstream cloning R primer
TG134 AAAGTTATCCACGGACGCCG qPCR F primer 1,727-kb region (ter)
TG135 TGGCGACCAACAAATGGTTAGAT qPCR R primer 1,727-kb region (ter)
TG136 CCACGGTACTCCAAATCTTTATCA qPCR F primer 429-kb region
TG137 GTTGGAAGTTATCTGCGTTACCG qPCR R primer 429-kb region
TG164 CCCGATAACAGAGACTTTACTCG qPCR F primer 579-kb region (oriC1)
TG165 GATGAGATTGACGCACTTGTGAAA qPCR R primer 579-kb region (oriC1)
TG172 AGAAAGTCACCCAGGATATAGCG qPCR F primer 0/2,226-kb region (oriC2)
TG173 GAAGGAGTCCATTATTTGCACAAG qPCR R primer 0/2,226-kb region (oriC2)
TG174 TTGATAAGTGCCATCTTCCCG qPCR F primer 1,197-kb region (oriC3)
TG175 AGCCACAAATCTCAACCTGGATA qPCR R primer 1,197-kb region (oriC3)
TG176 CGTCTTGCCATATTTTAGTGCG qPCR F primer 104-kb region
TG177 AATTGCGTACTCTCCTTTAGGTCA qPCR R primer 104-kb region
TG180 TCCTGGAGGAGAAATAGGGAT qPCR F primer 250-kb region
TG181 TGTATACGCGCATGAATCAC qPCR R primer 250-kb region
TG182 TTGAATGGGCAATTTGGTAA qPCR F primer 700-kb region
TG183 CGTTAACGGTATACGTCACGA qPCR R primer 700-kb region
TG186 CACCAGTGGCACTTTACTCG qPCR F primer 850-kb region
TG187 TCAGGGCTACGCATTAGTGA qPCR R primer 850-kb region
TG188 AATGTACAAATTTCACCGACAGA qPCR F primer 1,000-kb region
TG189 CCTTAACTCCATTTGCCACA qPCR R primer 1,000-kb region
TG190 GACTATGCAGCTGGTCCTGA qPCR F primer 1,350-kb region
TG191 ATTTACGGAATTGGCGTAGG qPCR R primer 1,350-kb region
TG192 TCCATTTGTGGATTTCTTTGA qPCR F primer 1,500-kb region
TG193 GCACTTGGGAACATAAGGTG qPCR R primer 1,500-kb region
TG194 GGTGTTTCATGACGGAGAGA qPCR F primer 1,900-kb region
TG195 AGCCAAAGGAGCACCTAAAC qPCR R primer 1,900-kb region
TG196 GCAGACATAAGGAACGGGAT qPCR F primer 2,050-kb region
TG197 CCATCCTAATCACGCATTTG qPCR R primer 2,050-kb region
Cdc45-F-NdeI CGCCGCATATGGAACTATTCTTAGGAGAGCCCA Amplification of SisCdc45
Cdc45-R-SalI CTAGTCGACTGTTCCGATAAGATTCTTAATTCTATC Amplification of SisCdc45
MCM-N-F-EcoRI CCGAATTCCATGGAAATTCCTAGCAAACAGATTGAC Construction of MCM-GST fusions
MCM-N-R-XhoI TTCAATGCTCGAGTCATGAAACTTCTATGCTACTAACTTTCATA Construction of MCM-GST fusions
MCM-N-A domain-R-XhoI GCTAACCTCGAGTCAAGGTATTCCTACAATTCTAACGTGAA Construction of MCM-GST fusions
MCM-N-BC domain-F-EcoRI CCGGAATTCTAGAGTTATAGAACTTAGAAAAATAAGAAGTAC Construction of MCM-GST fusions
SH TOP CTCTATCTATACTCTATCTATATAAGTATTTAAACTTTACTCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT Substrate for EMSA and helicase assays
SH LOWER TTTTTTTAGAGTAAAGTTTAAATACTTATATAGATAGAGTATAGATAGAG Substrate for EMSA and helicase assays
ssDNA TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGTAAAGTTTAAATACTGGTATAGCTAGAGTCTAGATAGAG ssDNA added to ATPase assays
ssDNA TOP CTCTATCTAGACTCTAGCTATACCAGTATTTAAACTTTACTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT For use in pulldown assay
ssDNA LOWER TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGTAAAGTTTAAATACTGGTATAGCTAGAGTCTAGATAGAG For use in pulldown assay
MCM 5′ GAATTCCCATGGAAATTCCTAGCAAACAGATTGACTATAG For mcm gene amplification and cloning into pET33b
MCM delta A 5′ GAATTCCCATGGAAATTCCTAGCAAACAGATTGACTATAG For amplifying DNA corresponding to MCM(106-686), MCM-ΔA, and cloning into pET33b
MCM 3′ GATCGTCGACTTAGACTTTTTTGTAACATTCTGGTTTTGCTTCGT For mcm gene amplification and cloning into pET33b