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. 2016 Nov 30;7:1907. doi: 10.3389/fmicb.2016.01907

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Copyright © 2016 Satharasinghe, Murulitharan, Tan, Yeap, Munir, Ideris and Omar.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Results from SimPlot Analysis of IBS025/13. The evidence for recombination of strain IBS025/13. (A) The similarity of the complete genome of IBS025/13 from SimPlot analysis with 38 representative complete genomes belonged to APMV-1. Standard similarity plot constructed using all sites of the complete genome within a sliding window of 200 bp wide centered on the position plotted with a step size between plots of 20 bp. The y-axis gives the percentage of identity. (B) The similarity of the first 1/3 genome representing NP, P, and M gene of IBS025/13 from SimPlot analysis with most similar nucleotide sequences belong to APMV-1. Standard similarity plot constructed using all sites of the first 1/3 genome with a window size of 200 bp and a step size of 20 bp. The y-axis gives the percentage of identity. Red vertical lines indicate the possible breakpoints.