Table 2. q values of network modules for Dataset 2 (Arabidopsis thaliana).

Module No.	Number of genes	Functions	q value (FDR)
Module 1	70 genes	gluthathione peroxidate activity	2.87e-16
		response to wounding	4.38e-15
		monocarboxylic acid metabloic process	2.1e-12
		jasmonic acid biosynthetic process	5.47e-10
		perioxidase activity	1.22e-9
Module 2	16 genes	apoplast	2.40e-7
		transferase activity transfering alkyl or aryl groups	1.56e-3
		response to cold	5.57e-3
		cellular response to water stimulus	6.64e-3
		copper ion binding	6.64e-3
Module 3	27 genes	aromatic amino acid family biosynthetic process	2.35e-9
		aromatic amino acid family metabolic process	5.38e-9
		cellular amino acid biosynthetic process	8.36e-6
		monocarboxylic acid metabolic process	1.09e-5
		lyase activity intramolecular transferase activity	2.91e-5
		indolalkylamine biosynthetic process	2.94e-5