Table 4. Comparison of THD-Module Extractor with FUMET and Qcut in terms of p values for Dataset 1⁴.

GO_ID	GO attribute	THD-Module Extractor	FUMET	Qcut
GO:0022402	Cell Cycle process	3.801e-24	1.482e-13	6.585e-8
GO:0044427	Chromosomal part	2.351e-21	7.860e-10	2.274e-9
GO:0007049	Cell Cycle	2.188e-20	5.388e-14	1.165e-7
GO:0044454	Nuclear chromosome part	3.413e-18	7.860e-10	2.274e-9
GO:0006281	DNA repair	1.949e-16	3.422e-9	2.970e-8
GO:0006974	Response to DNA damage stimulus	9.465e-16	1.461e-9	2.983e-7
GO:0051301	Cell division	2.508e-15	2.619e-7	1.547e-6
GO:0051716	Cellular response to stimulus	1.662e-10	6.375e-8	1.872e-7
GO:0006260	DNA replication	2.153e-13	2.124e-8	1.082e-7
GO:0006270	DNA replication initiation	1.688e-8	2.360e-8	1.081e-7
GO:0048523	Negative regulation of cellular process	5.185e-8	8.852e-9	7.970e-7
GO:0048519	Negative regulation of biological process	4.719e-8	1.308e-8	1.073e-6
GO:0005634	Nucleus	8.278e-8	4.693e-9	3.967e-8