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. 2016 Jun 1;7(26):39108–39117. doi: 10.18632/oncotarget.9773

Table 5. Primers used for the APOE PCR and the ARMS PCR for rs4925.

primer Sequence Tm (°C) Conc. (μM)
APOE-FW GACGCGGGACGGCTGTCCAAGGAGCTGCAGG
CGACGCAGGCCCGGCTGGACGCGGACATGGA
GGA
99.6 1.0
APOE-RV AGGCCACGCTCGACGCCCTCGCGGGCCCCGGCCTGGTACACT 90.7 1.0
GSTO1-FWinnerA TATTAGAAGCCAAAATAAAGAAGACTACGA 56 0.90
GSTO1-RVouter GAAAGTGGGAATATAAAGAAAAGAATAGGA 56 0.60
GSTO1-FWouter CGATACAGTTAGCCATAAACTGATAAACTAA 56 0.60
GSTO1-RVinnerC ATTCTTTACGAAATTCTTCTTTTAGGCTAG 56 0.84

The resulting fragments for the APOE genotyping are explained in Methods. The ARMS PCR for rs4925 generates a total fragment of the two outer primers (239bp) that serves as a positive control, a major C allele-specific fragment (132bp) and/or a minor A allele-specific fragment (167bp). All sequences are given in the 5′ to 3′ direction.

Abbreviations: Tm… melting temperature, Conc. … concentration, μM… 10E-6 mol/L