Table 5. Primers used for the APOE PCR and the ARMS PCR for rs4925.
| primer | Sequence | Tm (°C) | Conc. (μM) |
|---|---|---|---|
| APOE-FW | GACGCGGGACGGCTGTCCAAGGAGCTGCAGG CGACGCAGGCCCGGCTGGACGCGGACATGGA GGA |
99.6 | 1.0 |
| APOE-RV | AGGCCACGCTCGACGCCCTCGCGGGCCCCGGCCTGGTACACT | 90.7 | 1.0 |
| GSTO1-FWinnerA | TATTAGAAGCCAAAATAAAGAAGACTACGA | 56 | 0.90 |
| GSTO1-RVouter | GAAAGTGGGAATATAAAGAAAAGAATAGGA | 56 | 0.60 |
| GSTO1-FWouter | CGATACAGTTAGCCATAAACTGATAAACTAA | 56 | 0.60 |
| GSTO1-RVinnerC | ATTCTTTACGAAATTCTTCTTTTAGGCTAG | 56 | 0.84 |
The resulting fragments for the APOE genotyping are explained in Methods. The ARMS PCR for rs4925 generates a total fragment of the two outer primers (239bp) that serves as a positive control, a major C allele-specific fragment (132bp) and/or a minor A allele-specific fragment (167bp). All sequences are given in the 5′ to 3′ direction.
Abbreviations: Tm… melting temperature, Conc. … concentration, μM… 10E-6 mol/L