Table 3. Parentage of hybrid varieties with their organellar genotypes and the LOD scores used for error checking of DNA markers.

#	Hybrid variety			Seed parent			Pollen parent			LOD 2)	RCI 3)	SPP 4)
	ID	Variety name	CT1)	ID	Variety name	CT 1)	ID	Variety name	CT1)	score		Seed	Pollen
1	B001	Akemi	C12	B031	Kiyomi	C12	B056	Seminole	C04	91.3	172.3	51.8	48.1
2	B003	Aki Tangor	C12	A125	Satsuma	C12	A162	Sweet orange	C07	78.8	162.3	51.3	49.2
3	B005	Amaka	C12	B031	Kiyomi	C12	B014	Encore	C12	95.9	169.0	47.5	55.3
4	B006	Ariake	C07	A162	Sweet orange	C07	A009	Clementine	C12	108.0	185.3	49.2	50.9
5	B007	Asumi	C12	B077	Okitsu-46	C12	B021	Harumi	C12	99.5	171.8	49.3	53.7
6	B008	Aurastar	C04	B072	H/FD-1	C04	A004	Banpeiyu	C04	— 5)	— 5)	36.4	34.5
7	B009	Awa Orange	C05	A036	Hyuganatsu	C05	A162	Sweet orange	C07	72.9	175.2	46.8	45.4
8	B010	Benibae	C12	B073	HF9	C12	B014	Encore	C12	100.9	161.1	54.3	55.5
9	B011	Benimadoka	C04	A088	Mato buntan	C04	A032	Hirado buntan	C04	210.0	256.9	45.0	44.9
10	B014	Encore	C12	A054	King	C12	A201	Willowleaf mandarin	C12	102.5	167.2	53.1	58.9
11	B015	Fairchild	C12	A009	Clementine	C12	B045	Orland	C04	84.0	156.2	56.3	50.1
12	B017	Harehime	C12	B070	E-647	C12	A125	Satsuma	C12	103.3	179.5	49.6	46.4
13	B018	Hareyaka	C12	B014	Encore	C12	A107	Ponkan	C12	104.0	163.9	56.7	55.1
14	B019	Haruhi	C12	B077	Okitsu-46	C12	B009	Awa Orange	C05	97.5	179.3	49.8	49.3
15	B021	Harumi	C12	B031	Kiyomi	C12	A107	Ponkan	C12	94.6	172.0	49.5	51.9
16	B022	Hayaka	C12	A125	Satsuma	C12	A107	Ponkan	C12	91.8	169.1	48.8	51.7
17	B023	Hayasaki	C04	A088	Mato buntan	C04	A032	Hirado buntan	C04	209.5	257.1	44.4	44.2
18	B024	Himekoharu	C12	B031	Kiyomi	C12	A101	Oogonkan	C05	81.4	171.5	49.0	47.0
19	B026	Honey	C12	A054	King	C12	A201	Willowleaf mandarin	C12	114.5	181.6	52.9	56.0
20	B027	Kanpei	C12	B039	Nishinokaori	C12	A107	Ponkan	C12	98.4	167.7	51.4	48.7
21	B028	Kara mandarin	C12	A125	Satsuma	C12	A054	King	C12	77.2	148.8	53.9	54.0
22	B030	Kinnow mandarin	C12	A054	King	C12	A201	Willowleaf mandarin	C12	104.2	171.6	52.3	57.5
23	B031	Kiyomi	C12	A125	Satsuma	C12	A162	Sweet orange	C07	81.4	169.2	47.3	48.4
24	B033	Lee	C12	A009	Clementine	C12	B045	Orland	C04	103.9	178.9	53.7	48.1
25	B034	May Pomelo	C04	A028	Hassaku	C04	A032	Hirado buntan	C04	139.7	216.0	41.9	50.2
26	B035	Mihaya	C12	B066	Tsunonozomi	C12	B076	No.1408	C12	98.7	160.1	53.9	56.2
27	B036	Mihocore	C12	A125	Satsuma	C12	B014	Encore	C12	97.5	163.9	53.9	56.2
28	B037	Mineola	C04	A024	Grapefruit	C04	A016	Dancy tangerine	C12	90.2	164.0	47.5	52.1
29	B038	Nankou	C12	A125	Satsuma	C12	A009	Clementine	C12	104.8	175.7	49.7	48.9
30	B039	Nishinokaori	C12	B031	Kiyomi	C12	A162	Sweet orange	C07	94.8	186.5	47.9	44.6
31	B040	Nou 5 gou	C12	B033	Lee	C12	A059	Kishu	C12	113.9	175.5	53.0	54.0
32	B041	Nou 6 gou	C12	A054	King	C12	A059	Kishu	C12	106.3	174.4	53.6	53.0
33	B042	Nou 7 gou	C04	B072	H/FD-1	C04	A004	Banpeiyu	C04	— 5)	— 5)	37.7	38.8
34	B043	Nova	C12	A009	Clementine	C12	B045	Orland	C04	119.1	193.3	51.2	46.3
35	B045	Orland	C04	A024	Grapefruit	C04	A016	Dancy tangerine	C12	101.1	174.0	46.5	49.9
36	B047	Osceola	C12	A009	Clementine	C12	B045	Orland	C04	100.5	176.9	53.9	48.7
37	B048	Page	C04	B037	Mineola	C04	A009	Clementine	C12	110.7	180.3	49.3	53.5
38	B051	Robinson	C12	A009	Clementine	C12	B045	Orland	C04	104.2	180.5	54.5	47.6
39	B052	Saga Mandarin	C12	A125	Satsuma	C12	B015	Fairchild	C12	93.8	166.1	52.7	50.7
40	B054	Seihou	C12	B031	Kiyomi	C12	B037	Mineola	C04	98.0	180.7	50.3	49.4
41	B055	Seinannohikari	C12	B071	EnOw21	C12	B069	Youkou	C12	92.7	160.1	54.5	52.7
42	B056	Seminole	C04	A024	Grapefruit	C04	A016	Dancy tangerine	C12	93.3	171.6	46.3	51.1
43	B057	Setomi	C12	B031	Kiyomi	C12	A107	Ponkan	C12	107.5	185.5	47.7	48.4
44	B058	Shiranuhi	C12	B031	Kiyomi	C12	A107	Ponkan	C12	82.4	161.9	52.8	49.5
45	B059	Southern Yellow	C05	B063	Tanikawa Buntan	C05	A059	Kishu	C12	104.8	185.1	46.1	42.0
46	B060	Summer Fresh	C04	A028	Hassaku	C04	A098	Natsudaidai	C04	94.0	191.0	45.6	42.9
47	B061	Sweet Spring	C12	A125	Satsuma	C12	A028	Hassaku	C04	69.3	155.5	52.3	48.1
48	B062	Tamami	C12	B031	Kiyomi	C12	B067	Willking	C12	109.6	174.5	49.9	53.9
49	B064	Tsunokagayaki	C12	B074	KyOw14	C12	B014	Encore	C12	94.7	164.2	52.5	52.3
50	B065	Tsunokaori	C12	B031	Kiyomi	C12	A125	Satsuma	C12	84.9	159.5	52.0	45.9
51	B066	Tsunonozomi	C12	B031	Kiyomi	C12	B014	Encore	C12	94.1	165.4	50.4	53.3
52	B068	Yellow Pummelo	C04	A028	Hassaku	C04	A032	Hirado buntan	C04	108.5	183.5	47.5	52.6
53	B069	Youkou	C12	B031	Kiyomi	C12	A107	Ponkan	C12	77.2	159.1	50.3	52.4
54	B070	E-647	C12	B031	Kiyomi	C12	B047	Osceola	C12	111.8	183.7	49.3	49.9
55	B071	EnOw21	C12	B014	Encore	C12	A125	Satsuma	C12	97.2	165.5	52.5	52.2
56	B073	HF9	C12	A125	Satsuma	C12	A162	Sweet orange	C07	72.9	165.8	48.4	46.3
57	B074	KyOw14	C12	B031	Kiyomi	C12	A125	Satsuma	C12	91.7	170.1	51.3	50.6
58	B075	KyOw21	C12	B031	Kiyomi	C12	A125	Satsuma	C12	96.9	174.3	51.4	48.8
59	B077	Okitsu-46	C12	B061	Sweet Spring	C12	A162	Sweet orange	C07	76.9	173.0	46.8	47.0

1) Category of organellar genotype (see Table 9).

2) LOD: See the section ‘Stochastic evaluation of inferred parentage’.

3) RCI: required cross trial index obtained by Eq 7.

4) SPP: Single parent–offspring probability for seed parent or pollen parent obtained by Eq 8.

⁵) Score or value was indeterminate due to lack of allele in H/FD-1.

All DNA markers were also evaluated for error with 64 selected strains.