Table 14. List of the inferred parentage in the indigenous varieties and orphan hybrid varieties.

No.	Offspring variety			Inferred seed parent			Inferred pollen parent			Scores
	ID	Variety	CT	ID	Variety	CT)	ID	Variety	CT	MM	Matched(%)	LOD 1)score	RCI 2)
1	A001	Andoukan	C04	A049	Kaikoukan	C04	A059	Kishu	C12	0	100.0%	80.9	158.0
2	A006	Bergamot	C06	A085	Lemon	C06	A141	Sour orange	C06	4	96.7%	125.9	221.7
3	A009	Clementine	C12	A201	Willowleaf mandarin	C12	A162	Sweet orange	C07	0	100.0%	92.6	176.0
4	A014	Cravo	C12	A201	Willowleaf mandarin	C12	A162	Sweet orange	C07	0	100.0%	90.7	168.5
5	A019	Fukure mikan	C12	A059	Kishu	C12	A076	Koji	C18	0	100.0%	100.0	170.2
6	A027	Hanayu	C09	A208	Yuzu	C09	A172	Tachibana-A	C14	2	98.4%	173.3	251.8
7	A030	Henka mikan	C07	A081	Kunenbo-A	C07	A208	Yuzu	C09	2	98.4%	99.7	201.2
8	A044	Iyo	C04	A049	Kaikoukan	C04	A016	Dancy	C12	0	100.0%	92.7	163.6
9	A045	Jabara	C07	A081	Kunenbo-A	C07	A208	Yuzu	C09	3	97.6%	110.6	212.8
10	A047	Kabosu	C07	A081	Kunenbo-A	C07	A208	Yuzu	C09	1	99.2%	101.4	202.8
11	A052	Keraji	C07	A048	Kabuchi	C07	A081	Kunenbo-A	C07	0	100.0%	89.3	187.9
12	A073	Kizu	C07	A081	Kunenbo-A	C07	A208	Yuzu	C09	2	98.4%	102.9	203.0
13	A091	Mochiyu	C07	A081	Kunenbo-A	C07	A208	Yuzu	C09	2	98.4%	97.5	196.8
14	A100	Nidonari mikan	C12	A059	Kishu mandarin	C12	A141	Sour orange	C06	0	100.0%	88.7	177.0
15	A112	Sanbokan	C04	A049	Kaikoukan	C04	A059	Kishu	C12	0	100.0%	82.3	161.5
16	A125	Satsuma	C12	A059	Kishu	C12	A081	Kunenbo-A	C07	0	100.0%	75.3	162.2
17	A138	Sokitsu	C12	A059	Kishu	C12	A075	Kobeni mikan	C12	0	100.0%	127.1	178.6
18	A147	Suruga Yuko	C12	A059	Kishu	C12	A076	Koji	C18	0	100.0%	114.6	189.0
19	A186	Temple	C12	A201	Willowleaf mandarin	C12	A162	Sweet orange	C07	4	96.7%	81.9	160.4
20	A188	Tizon	C07	A162	Sweet orange	C07	A013	Cleopatra	C17	0	100.0%	88.3	162.0
21	A204	Yatsushiro	C07	A081	Kunenbo-A	C07	A059	Kishu	C12	1	99.2%	82.3	169.2
22	A207	Yuukunibu	C04	A001	Andoukan	C04	A112	Sanbokan	C04	1	99.2%	74.1	164.5
23	B016	Fortune	C12	A009	Clementine	C12	B045	Orland	C04	0	100.0%	98.9	174.7
24	B020	Haruka	C05	A036	Hyuganatsu	C05	A096	Natsudaidai	C04	0	100.0%	65.5	171.8

CT: Classes of organelle genotype (see Table 11), MM: Number of mismatched markers.

1) LOD: see the section ‘Stochastic evaluation of inferred parentage’

2) RCI: required cross trial index obtained using Eq 7.