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. 2016 Nov 30;11(11):e0166969. doi: 10.1371/journal.pone.0166969

Table 15. Inferred parent-to-child combinations in the indigenous varieties.

Offspring variety Inferred seed parent Inferred pollen parent Scores
# ID Variety CT ID Variety *) CT ID Variety *) CT MM Matched (%) LOD 1) score RCI 2) SPP 3)
1 A003 Asahikan C04 (pummelo type) C04 A081 Kunenbo-A C07 0 100.0 6.6 173.4 41.2
2 A021 Funadoko C04 (pummelo type) C04 A005 Bendizao C12 0 100.0 17.7 164.1 47.2
3 A023 Girimikan C18 (Koji type) C18 A175 Tachibana-B C14 1 99.2 61.8 186.3 53.1
4 A024 Grapefruit C04 (pummelo type) C04 A162 Sweet orange C07 0 100.0 14.5 177.9 42.0
5 A028 Hassaku C04 (pummelo type) C04 A081 Kunenbo-A C07 0 100.0 16.2 176.6 42.6
6 A031 Hickson C12 A107 Ponkan C12 (Unidentified) 0 100.0 50.9 179.6 51.7
7 A033 Hiroshimanatsubuntan C06 A141 Sour orange C06 (Unidentified) 0 100.0 41.7 187.3 47.6
8 A035 Hyoukan C04 (pummelo type) C04 A081 Kunenbo-A C07 0 100.0 4.0 169.9 42.1
9 A036 Hyuganatsu C05 (Hyuganatsu type) C05 A175 Tachibana-B C14 0 100.0 34.0 188.4 44.5
10 A041 Ichanchii (C.ichangensis) C01 (C. ichangensis type) C01 A085 Lemon C06 1 99.2 52.9 298.4 35.5
A085 Lemon C06 (lemon type) C06 A041 Ichanchii (C.ichangensis) C01 1 99.2 52.9 278.5 37.3
11 A042 Ichang lemon C10 (Ichang lemon type) C10 A208 Yuzu C09 1 99.2 59.1 255.8 38.3
12 A046 Jabon C04 (pummelo type) C04 A208 Yuzu C09 0 100.0 40.3 194.8 43.9
13 A048 Kabuchi C07 A081 Kunenbo-A C07 (Unidentified) 0 100.0 7.6 189.8 42.6
14 A049 Kaikoukan C04 (pummelo type) C04 A081 Kunenbo-A C07 0 100.0 16.5 192.3 38.5
15 A050 Kawabata C05 (Hyuganatsu type) C05 A081 Kunenbo-A C07 0 100.0 18.5 177.6 44.8
16 A051 Kawachi bankan C04 A197 Ujukitsu C04 (Unidentified) 0 100.0 17.0 186.4 41.1
A051 Kawachi bankan C04 A205 Yuge hyoukan C04 (Unidentified) 0 100.0 34.9 186.4 45.6
17 A076 Koji C18 (Koji type) C18 A174 Tachibana-C C15 2 98.4 36.8 184.8 47.9
18 A055 Kinkoji C04 (pummelo type) C04 A081 Kunenbo-A C07 0 100.0 19.0 187.4 41.0
19 A079 Kourai Tachibana C09 A208 Yuzu C09 (Unidentified) 2 98.4 72.5 231.6 47.5
20 A081 Kunenbo-A C07 (Sweet orange type) C07 A059 Kishu C12 0 100.0 3.3 152.7 45.9
21 A082 Kunenbo-B C11 (Kunenbo_B type) C11 A141 Sour orange C06 0 100.0 15.5 188.3 42.4
22 A085 Lemon C06 A141 Sour orange C06 (Unidentified) 0 100.0 13.4 280.8 31.8
A141 Sour orange C06 A085 Lemon C06 (Unidentified) 0 100.0 13.4 180.6 42.2
23 A090 Meyer lemon C07 (sweet orange type) C07 A087 Limonia C03 1 99.2 113.1 266.7 43.5
24 A092 Murcott C12 A054 King C12 (Unidentified) 0 100.0 40.8 177.0 50.8
25 A098 Natsudaidai C04 (pummelo type) C04 A059 Kishu C12 1 99.2 -1.4 163.5 42.7
26 A095 Naruto C04 (pummelo type) C04 A059 Kishu C12 0 100.0 1.3 169.9 40.0
27 A101 Oogonkan C05 (Hyuganatsu type) C05 A174 Tachibana-C C15 0 100.0 34.6 180.9 47.7
28 A103 Ootoukan C04 (pummelo type) C04 A005 Bendizao C12 0 100.0 22.0 178.1 43.7
29 A104 Oukan C04 (pummelo type) C04 A059 Kishu C12 0 100.0 11.1 171.3 42.8
30 A107 Ponkan C12 A016 Dancy C12 (Unidentified) 1 99.2 63.6 179.4 54.7
31 A109 Ponkitsu C13 A183 Tankan C13 (Unidentified) 0 100.0 61.4 190.5 52.1
32 A111 Rokugatsumikan C06 A141 Sour orange C06 (Unidentified) 0 100.0 17.0 208.5 40.4
33 A135 Shiikuwasha C13 (Sunki type) C13 A192 Twukkuni C07 1 99.2 63.6 196.0 52.0
34 A137 Shunkokan C04 (pummelo type) C04 A204 Yatsushiro C07 0 100.0 19.8 167.6 47.8
35 A144 Sudachi C18 (Koji type) C18 A208 Yuzu C09 3 97.6 67.2 210.1 47.8
36 A145 Suisho buntan C04 A191 Tosa buntan C04 (Unidentified) 0 100.0 73.3 237.7 42.9
37 A183 Tankan C13 (Sunki type) C13 A162 Sweet orange C07 0 100.0 28.4 188.8 44.6
38 A187 Tengu C05 (Hyuganatsu type) C05 A162 Sweet orange C07 0 100.0 14.5 167.8 43.2
39 A197 Ujukitsu C04 (pummelo type) C04 A059 Kishu C12 0 100.0 9.3 161.8 46.4
A197 Ujukitsu C04 A205 Yuge hyoukan C04 (Unidentified) 0 100.0 22.1 161.8 49.2
40 A198 Unzoki C07 A081 Kunenbo-A C07 (Unidentified) 0 100.0 6.3 188.8 42.0
41 A199 USSR Tangelo C12 A125 Satsuma C12 (Unidentified) 0 100.0 9.1 177.0 42.0
42 A202 Yamabuki C04 A049 Kaikoukan C04 (Unidentified) 0 100.0 38.3 166.3 50.2
43 A203 Yamamikan C07 A162 Sweet orange C07 (Unidentified) 0 100.0 15.3 181.0 42.4
44 A205 Yuge hyoukan C04 A197 Ujukitsu C04 (Unidentified) 0 100.0 22.1 179.0 44.4
A205 Yuge hyoukan C04 A095 Naruto C04 (Unidentified) 0 100.0 14.7 179.0 43.5
45 A206 Youpi ju (Yuhikitsu) C12 A200 Willowleaf mandarin C12 (Unidentified) 0 100.0 52.7 194.3 54.4

CT: Classes of organelle genotype (see Table 9), MM: Number of mismatched markers.

1) LOD: see the section ‘Stochastic evaluation of inferred parentage’.

2) RCI: required cross trial index obtained using Eq 7.

3) SPP: Single parent–offspring probability obtained using Eq 8.