Table 3.
Expression pattern of 15 effector proteins highly expressed during the necrotrophic phase of a compatible interaction of Leptosphaeria maculans with canola.
| Gene name | Gene ID | Expression value (FPKM*) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Topas-wild (compatible) | Topas-Rlm2 (incompatible) | ||||||||
| 3 dpi | 5 dpi | 7 dpi | 11 dpi | 3 dpi | 5 dpi | 7 dpi | 11 dpi | ||
| Gene_8419 | Lema_T124480 | 62.8 | 21.6 | 230.5 | 4859.8 | 47.2 | 112.1 | 409.5 | 223.9 |
| Gene_6367 | Lema_T023410 | 0.0 | 130.8 | 611.8 | 2132.9 | 46.1 | 265.2 | 325.7 | 184.8 |
| Gene_368 | Lema_T003680 | 237.6 | 357.1 | 74.3 | 1026.7 | 215.5 | 243.9 | 0.0 | 318.7 |
| Gene_3948 | Lema_T103880 | 0.0 | 0.0 | 36.6 | 829.0 | 20.0 | 0.0 | 110.7 | 2.2 |
| Gene_4618 | Lema_T102900 | 1.0 | 0.0 | 197.2 | 338.5 | 1.2 | 0.0 | 0.0 | 89.5 |
| Gene_8514 | Lema_T033330 | 8.5 | 11.1 | 34.2 | 258.5 | 9.5 | 201.0 | 72.1 | 150.0 |
| Gene_2889 | Lema_T081900 | 0.0 | 11.6 | 16.7 | 224.8 | 0.0 | 50.0 | 0.0 | 4.4 |
| Gene_11386 | Lema_T056380 | 19.0 | 15.1 | 156.2 | 202.1 | 37.9 | 21.1 | 34.0 | 16.1 |
| Gene_776 | Lema_T007760 | 54.7 | 55.9 | 45.3 | 178.5 | 44.6 | 109.6 | 60.7 | 90.8 |
| Gene_387 | Lema_T003870 | 7.3 | 21.3 | 99.0 | 174.5 | 43.8 | 72.1 | 44.1 | 85.2 |
| Gene_775 | Lema_T007750 | 37.0 | 0.0 | 32.6 | 99.1 | 31.9 | 49.7 | 65.1 | 34.4 |
| Gene_588 | Lema_T005880 | 16.7 | 25.2 | 67.5 | 97.2 | 24.8 | 31.7 | 10.0 | 4.5 |
| Gene_1689 | Lema_T077140 | 16.6 | 6.2 | 26.3 | 56.8 | 25.2 | 34.7 | 8.6 | 13.7 |
| Gene_8091 | Lema_T029850 | 27.5 | 4.4 | 27.4 | 45.4 | 28.4 | 4.2 | 27.1 | 4.5 |
| Gene_4923 | Lema_T109480 | 13.0 | 4.7 | 57.3 | 61.9 | 9.9 | 6.3 | 32.3 | 3.1 |
*
Analyses were performed with five biological replicates. dpi, days post inoculation; FPKM, Fragments per kilo-base of transcript per million mapped reads.