Table 2.
Species detected | m-PCR | Culturing method | |||
---|---|---|---|---|---|
Direct | Postenrichment | Direct | Postenrichment | ||
A. butzleri (Ab) | 19 (100) | 15 (100) | 22 (78.6) | 24 (82.8) | |
A. cryaerophilus (Ac) | 10 (52.6) | 9 (60) | 27 (96.4) | 16 (55.2) | |
A. defluvii (Ad) | 0 | 0 | 2 (7.1) | 3 (10.3) | |
A. nitrofigilis (Anit) | 0 | 0 | 1 (3.6) | 0 | |
A. cloacae (Aclo) | 0 | 0 | 0 | 2 (6.9) | |
A. skirrowii (As) | 0 | 0 | 1 (3.6) | 2 (6.9) | |
A. thereius (At) | 0 | 0 | 3 (10.7) | 4 (13.8) | |
A. ellisii (Ae) | 0 | 0 | 2 (7.1) | 0 | |
| |||||
Sampling month | Sampling point | m-PCR | Culturing method | ||
Direct | Postenrichment | Direct | Postenrichment | ||
| |||||
April 2009 | Influent water | Ac+Ab | ND | Ac+Anit | Ac+Ad+Aclo |
Primary sedimentation tank | Ac+Ab | ND | Ac+Ab+Ad | Ac+Ab | |
Secondary bioreactor tank | Negative | ND | Ac+Ad | Ac+Ad | |
Secondary sedimentation tank | Negative | ND | Negative | Ab+Ad | |
Effluent water | Negative | ND | Negative | Negative | |
| |||||
June 2009 | Influent water | Negative | ND | Ac+Ab | Ab |
Primary sedimentation tank | Ab | ND | Ac+Ab | Ab | |
Secondary bioreactor tank | Negative | ND | Ac+Ab | Ab | |
Secondary sedimentation tank | Negative | ND | Ac | Ac+Ab | |
Effluent water | Negative | ND | Ac+Ab | Ab | |
| |||||
October 2009 | Influent water | Ac+Ab | ND | Ac | Ac+Ab |
Primary sedimentation tank | Ac+Ab | ND | Ac+Ab | Ac+Ab | |
Secondary bioreactor tank | Negative | ND | Ac | Ab | |
Secondary sedimentation tank | Ab | ND | Ac+Ab | Ac+Ab | |
Effluent water | Negative | ND | Ac+Ab | Ab | |
| |||||
May 2011 | Influent water | Ab | Ab+Ac | Ac+At | Ab+Ac+At |
Primary sedimentation tank | Ab+Ac | Ab+Ac | Ab+Ac+At | Ac+At | |
Secondary bioreactor tank | Ab | Ab+Ac | Ab+Ac+As | Ac+As | |
Secondary sedimentation tank | Ab | Ab+Ac | Ab+Ac | Ab+Ac | |
Effluent water | Ab | Ab+Ac | Ab+Ac | Ab+Ac | |
| |||||
June 2011 | Influent water | Ab+Ac | Ab | Ab+Ac+Ae | Ab+As |
Primary sedimentation tank | Ab+Ac | Ab | Ab+Ac | Ab+Ac | |
Secondary bioreactor tank | Ab | Ab | Ab+Ac+At | At | |
Secondary sedimentation tank | Ab | Ab | Ab+Ac | Ab+Ac+At | |
Effluent water | Ab | Ab | Ab+Ac | Ab | |
| |||||
September 2011 | Influent water | Ab+Ac | Ab+Ac | Ab+Ac+Ae | Ab+Aclo |
Primary sedimentation tank | Ab+Ac | Ab+Ac | Ab+Ac | Ab | |
Secondary bioreactor tank | Ab+Ac | Ab+Ac | Ab+Ac | Ab+Ac | |
Secondary sedimentation tank | Negative | Ab | Ab | Ab | |
Effluent water | Negative | Ab+Ac | Ab+Ac | Ab+Ac | |
| |||||
Total No. positive samples (%) | 19/30 (63.3) | 15/15 (100) | 28/30 (86.7) | 29/30 (86.7) |
aThe identified species are only mentioned once, independently of the number of strains obtained from each specific sample.
m-PCR: multiplex PCR Houf et al., 2000 [19]
ND: not done.