Table 8.
Taxonomic composition
| Phylum | SAE3-0 CPMa |
SAE3-5 CPM |
Log2 Fold-Change | Total Raw Counts |
|---|---|---|---|---|
| Proteobacteria | 902,173.65 | 777,848.47 | −0.21 | 14,270,944 |
| Firmicutes | 18,007.05 | 56,618.88 | 1.65 | 665,155 |
| Euryarchaeota | 2,431.96 | 64,504.59 | 4.73 | 616,044 |
| Bacteroidetes | 14,088.27 | 33,537.14 | 1.25 | 420,818 |
| Actinobacteria | 17,115.85 | 10,802.99 | −0.66 | 234,150 |
| Cyanobacteria | 11,765.89 | 11,318.40 | −0.06 | 196,982 |
| Chlorobi | 4,290.76 | 6,684.93 | 0.64 | 95,503 |
| Planctomycetes | 6,289.51 | 2,718.90 | −1.21 | 74,466 |
| Chloroflexi | 4,178.12 | 4,307.47 | 0.04 | 72,617 |
| Verrucomicrobia | 3,266.26 | 2,962.45 | −0.14 | 53,021 |
| Acidobacteria | 2,671.54 | 2,687.13 | 0.01 | 45,811 |
| unclassified (derived from Bacteria) | 2,923.61 | 1,836.12 | −0.67 | 39,911 |
| Spirochaetes | 1,307.70 | 3,105.62 | 1.25 | 38,993 |
| Aquificae | 952.30 | 2,758.34 | 1.53 | 32,993 |
| Deinococcus-Thermus | 1,709.80 | 1,658.48 | −0.04 | 28,752 |
| Thermotogae | 8,47.05 | 2,259.90 | 1.42 | 27,555 |
| Nitrospirae | 1,631.34 | 1,515.31 | −0.11 | 26,812 |
| Deferribacteres | 497.52 | 2,447.58 | 2.30 | 26,552 |
| Synergistetes | 430.03 | 2,233.53 | 2.38 | 24,042 |
| Fusobacteria | 482.21 | 2,029.32 | 2.07 | 22,561 |
| Chrysiogenetes | 301.95 | 1,136.92 | 1.91 | 12,889 |
| Lentisphaerae | 257.31 | 1,129.68 | 2.13 | 12,472 |
| Chlamydiae | 514.61 | 618.05 | 0.26 | 9,754 |
| Crenarchaeota | 371.35 | 654.25 | 0.82 | 8,966 |
| Elusimicrobia | 146.83 | 828.32 | 2.50 | 8,817 |
| Gemmatimonadetes | 471.62 | 239.12 | −0.98 | 5,910 |
| Tenericutes | 198.75 | 394.06 | 0.99 | 5,205 |
| Dictyoglomi | 132.67 | 356.46 | 1.43 | 4,339 |
| unclassified (derived from Archaea) |
72.84 | 344.47 | 2.24 | 3,759 |
| Fibrobacteres | 81.77 | 232.31 | 1.51 | 2,791 |
| Thaumarchaeota | 226.18 | 104.16 | −1.12 | 2,737 |
| Candidatus Poribacteria | 135.61 | 71.53 | −0.92 | 1,725 |
| Korarchaeota | 22.07 | 46.03 | 1.06 | 599 |
| Nanoarchaeota | 6.00 | 9.08 | 0.60 | 131 |
aCPM: Counts per million. Normalized values were calculated by dividing the abundance for each genera by the column total and multiplying by 106.