Table 4. Summary and annotation of SNPs.

Group		Low Fecundity	High Fecundity
Upstream		73,859	73,433
Exonic	Stop gain	440	380
	Stop loss	60	62
	Synonymous	43,697	43,330
	Non-synonymous	37,755	37,501
Intronic		3,519,630	3,513,651
Splicing		498	491
Downstream		70,317	70,199
Upstream/Downstream		922	908
Intergenic		8,697,962	8,669,931
ts		8,690,022	8,657,646
tv		3,768,689	3,765,482
ts/tv		2.305	2.299
Het rate (‰)		4.260	4.262
Total		12,458,711	12,423,128