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. 2016 Dec 1;11(12):e0167515. doi: 10.1371/journal.pone.0167515

Table 2. Details of primer pairs used for real-time PCR assays.

5’-3’ primer sequence
Gene name Forward Reverse Amplicon size (bp) Annealing temperature (°C) Primer efficiency GenBank accession no. Primer reference
aqp-1a CTACCTTCCAGCTGGTCCTG TGATACCGCAGCCTGTGTAG 141 62 2.05 BT046625 [16]
aqp-1b CTGTGGGTCTGGGACATCTT TAAGGGCTGCTGCTACACCT 153 62 2.00 NM_001140000.1 [16]
aqp-8ab GGAGCTGCCATGTCAAAGAT CGCCCCTAGCAATACTACCA 159 60 2.00 KC626879.1 [6]
aqp-10 GGTGTTGGTGATCGGAGTCT CGCCCTAAACACCTCATCC 121 60 1.68 DW569041 [16]
nka α-1c GAGAGGGAGACGTACTACTAGAAAGCA CAGCAAGACAACCATGCAAGA 69 60 2.01 NM_001124459 [26]
nka α-1b CTGCTACATCTCAACCAACAACATT CACCATCACAGTGTTCATTGGAT 81 60 2.00 NM_001124460 [26]
fxyd-12a ATCCCTCCGTCATTGGTCAA TGCTTCATAACTGCTTTCCCTG 96 62 2.01 NM_001123730.1  
fxyd-12b AGGGCAGCTGACTACAGAGA TGCATCAGGGTCGTACTCAG 139 55 1.96 BK006250  
fxyd-12c GACCTTCGTTGCAGTCATCA GGCTTCTCTTCAACCTTTCTTTC 102 62 2.00 BK006251  
nkcc-1a GATGATCTGCGGCCATGTTC CTCGTTCTTCATCAGCCAGC 100 60 1.97 NM_001123683.1  
nkcc-2 CCGCGTGCCCAACATC GCACGGTTACCGCTCACACT 57 60 2.03 NM_001141520 [18]
clc-3 CGAGGGCATCTACGAATCACA CTCCTTGGCGTCGAGGAA 61 60 1.95 NM _001173586 [18]
cftr-II AGAATGGGACCGAGAAGTGG CTCCCCAAAGTACAGCAGGA 115 62 1.91 NM_001123534.1  
guanylin ATCTGGTCTCTGAAGCCCAC CCGTTTACACTGCTGCTCTC 115 60 2.02 BT047912.2  
claudin-15 GGCACGTCTGAGAAACAACA TAGGAAGTGGCAGCCTGACT 92 60 2.02 BK006395 [19]
claudin-25b CCTGTAAGAGGGGTCCATCA TGACACATGTTCTGCCCTGT 101 60 1.98 BK006399 [19]
occludin GACAGTGAGTTCCCCACCAT ATCTCTCCCTGCAGGTCCTT 101 60 2.12 NM_001173656.1 [22]
tricellulin GGATGCCATGATGGGTAAAC AGGAAGGCTGGGTCACTCTT 111 60 2.03 DW548339 [22]
jam-1a TCGGCAGGCTATTCAAGAGT AGTAGGTTCCTCTGGCACTG 110 60 2.00 GBRB01043957.1  
jam-1b CGTTGCGGAAGGGCGTAG CCAGCGATGTGTCCGATTTC 146 60 2.00 GBRB01043958.1  
zo-1 CAAAGCCAGTGTATGCCCAG CAGCTTCATACTCGGCCTGA 119 60 1.93 >gnl|SRA|SRR403078.506834.2  
cingulin AAAAGCACCCTGGAGAGACA TTTGTTCCTCTCCTCCACCC 147 60 2.02 JT824570  
e-cadherin ACTATGACGAGGAGGGAGGT TGGAGCGATGTCATTACGGA 107 60 1.98 BT058864.1
β-catenin ATGAGGACGCAGATGACCAA CTGGGGTGTCTGGGAACTTT 126 62 2.07 NM_001140567.1  
gapdh AAGTGAAGCAGGAGGGTGGAA CAGCCTCACCCCATTTGATG 96 60 1.85 BT050045 [27]
rnapoii CCAATACATGACCAAATATGAAAGG ATGATGATGGGGATCTTCCTGC 157 60 1.80 BG936649 [27]
hprt1 CCGCCTCAAGAGCTACTGTAAT GTCTGGAACCTCAAACCCTATG 255 60 1.99 BT043501 [27]

Abbreviations: aqp, aquaporin; nka, Na+, K –ATPase; nkcc, Na+, K, 2Cl- co-transporter; clc, chloride channel; cftr-II, cystic fibrosis transmembrane conductance regulator Cl channel II; jam, junctional adhesion molecules; zo, zonula occludens; gapdh, glyceraldehyde-3-phosphate dehydrogenase; rnapoii, RNA polymerase 2; hprt1, hypoxanthine phosphoribosyltransferase 1; fxyd-12, fxyd domain-containing ion transport regulator 12.