Table 2. Details of primer pairs used for real-time PCR assays.
5’-3’ primer sequence | |||||||
---|---|---|---|---|---|---|---|
Gene name | Forward | Reverse | Amplicon size (bp) | Annealing temperature (°C) | Primer efficiency | GenBank accession no. | Primer reference |
aqp-1a | CTACCTTCCAGCTGGTCCTG | TGATACCGCAGCCTGTGTAG | 141 | 62 | 2.05 | BT046625 | [16] |
aqp-1b | CTGTGGGTCTGGGACATCTT | TAAGGGCTGCTGCTACACCT | 153 | 62 | 2.00 | NM_001140000.1 | [16] |
aqp-8ab | GGAGCTGCCATGTCAAAGAT | CGCCCCTAGCAATACTACCA | 159 | 60 | 2.00 | KC626879.1 | [6] |
aqp-10 | GGTGTTGGTGATCGGAGTCT | CGCCCTAAACACCTCATCC | 121 | 60 | 1.68 | DW569041 | [16] |
nka α-1c | GAGAGGGAGACGTACTACTAGAAAGCA | CAGCAAGACAACCATGCAAGA | 69 | 60 | 2.01 | NM_001124459 | [26] |
nka α-1b | CTGCTACATCTCAACCAACAACATT | CACCATCACAGTGTTCATTGGAT | 81 | 60 | 2.00 | NM_001124460 | [26] |
fxyd-12a | ATCCCTCCGTCATTGGTCAA | TGCTTCATAACTGCTTTCCCTG | 96 | 62 | 2.01 | NM_001123730.1 | |
fxyd-12b | AGGGCAGCTGACTACAGAGA | TGCATCAGGGTCGTACTCAG | 139 | 55 | 1.96 | BK006250 | |
fxyd-12c | GACCTTCGTTGCAGTCATCA | GGCTTCTCTTCAACCTTTCTTTC | 102 | 62 | 2.00 | BK006251 | |
nkcc-1a | GATGATCTGCGGCCATGTTC | CTCGTTCTTCATCAGCCAGC | 100 | 60 | 1.97 | NM_001123683.1 | |
nkcc-2 | CCGCGTGCCCAACATC | GCACGGTTACCGCTCACACT | 57 | 60 | 2.03 | NM_001141520 | [18] |
clc-3 | CGAGGGCATCTACGAATCACA | CTCCTTGGCGTCGAGGAA | 61 | 60 | 1.95 | NM _001173586 | [18] |
cftr-II | AGAATGGGACCGAGAAGTGG | CTCCCCAAAGTACAGCAGGA | 115 | 62 | 1.91 | NM_001123534.1 | |
guanylin | ATCTGGTCTCTGAAGCCCAC | CCGTTTACACTGCTGCTCTC | 115 | 60 | 2.02 | BT047912.2 | |
claudin-15 | GGCACGTCTGAGAAACAACA | TAGGAAGTGGCAGCCTGACT | 92 | 60 | 2.02 | BK006395 | [19] |
claudin-25b | CCTGTAAGAGGGGTCCATCA | TGACACATGTTCTGCCCTGT | 101 | 60 | 1.98 | BK006399 | [19] |
occludin | GACAGTGAGTTCCCCACCAT | ATCTCTCCCTGCAGGTCCTT | 101 | 60 | 2.12 | NM_001173656.1 | [22] |
tricellulin | GGATGCCATGATGGGTAAAC | AGGAAGGCTGGGTCACTCTT | 111 | 60 | 2.03 | DW548339 | [22] |
jam-1a | TCGGCAGGCTATTCAAGAGT | AGTAGGTTCCTCTGGCACTG | 110 | 60 | 2.00 | GBRB01043957.1 | |
jam-1b | CGTTGCGGAAGGGCGTAG | CCAGCGATGTGTCCGATTTC | 146 | 60 | 2.00 | GBRB01043958.1 | |
zo-1 | CAAAGCCAGTGTATGCCCAG | CAGCTTCATACTCGGCCTGA | 119 | 60 | 1.93 | >gnl|SRA|SRR403078.506834.2 | |
cingulin | AAAAGCACCCTGGAGAGACA | TTTGTTCCTCTCCTCCACCC | 147 | 60 | 2.02 | JT824570 | |
e-cadherin | ACTATGACGAGGAGGGAGGT | TGGAGCGATGTCATTACGGA | 107 | 60 | 1.98 | BT058864.1 | |
β-catenin | ATGAGGACGCAGATGACCAA | CTGGGGTGTCTGGGAACTTT | 126 | 62 | 2.07 | NM_001140567.1 | |
gapdh | AAGTGAAGCAGGAGGGTGGAA | CAGCCTCACCCCATTTGATG | 96 | 60 | 1.85 | BT050045 | [27] |
rnapoii | CCAATACATGACCAAATATGAAAGG | ATGATGATGGGGATCTTCCTGC | 157 | 60 | 1.80 | BG936649 | [27] |
hprt1 | CCGCCTCAAGAGCTACTGTAAT | GTCTGGAACCTCAAACCCTATG | 255 | 60 | 1.99 | BT043501 | [27] |
Abbreviations: aqp, aquaporin; nka, Na+, K– –ATPase; nkcc, Na+, K–, 2Cl- co-transporter; clc, chloride channel; cftr-II, cystic fibrosis transmembrane conductance regulator Cl– channel II; jam, junctional adhesion molecules; zo, zonula occludens; gapdh, glyceraldehyde-3-phosphate dehydrogenase; rnapoii, RNA polymerase 2; hprt1, hypoxanthine phosphoribosyltransferase 1; fxyd-12, fxyd domain-containing ion transport regulator 12.