Table 3.

Significant haplotypes on MAP4 gene by LBL

SNP# in haplotype block	Location	Hap name	Hap freq	LBL (OR)	LBL (BF)	Haplo GLM (p value)	Haplo score (p value)	Haplo score overall test (p value)
11–15	47956424–47969734	10000	0.0041	2.467	3.190*	0.011*	0.010*	0.089

Major allele is coded as zero. SNP# corresponds to the order of SNP in the gene among SNPs with MAF ≥0.001 and no more than 25 % missing genotypes

Hap haplotype, Hap freq, haplotype frequency (obtained from hapassoc)

*Significant BF or p value