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. 2016 Oct 18;10(Suppl 7):103–108. doi: 10.1186/s12919-016-0013-1

Table 1.

Transcripts for whom their variation in expression levels can be explained by a covariance kernel composed by SNP with FP estimates, at genome-wide significance

Transcript Covariance kernel
Non-weighted Weighted
h2r h2r_p geff geff_p h2r h2r_p Geff geff_p
GI_42544126-I 0.0000 0.5000 0.7074 4.03E-15 0.0000 0.5000 0.7145 4.55E-18
GI_23097237-S 0.0000 0.5000 0.7848 1.15E-14 0.0000 0.5000 0.7493 7.46E-12
GI_10863968-S 0.0000 0.5000 0.6109 5.68E-10 0.0000 0.5000 0.6122 9.05E-11
Hs.283934-S 0.0746 0.3138 0.8382 9.77E-10 0.1497 0.1443 0.7657 4.87E-09
GI_12056480-A 0.2357 0.0457 0.7069 1.69E-08 0.2792 0.0194 0.6628 5.43E-08
GI_20986517-S 0.0000 0.5000 0.7671 5.58E-08 0.0000 0.5000 0.7726 3.08E-08
Hs.58104-S 0.2230 0.0753 0.6886 6.89E-07 0.2705 0.0333 0.6415 8.47E-07
GI_41393558-I 0.0000 0.5000 0.5331 1.92E-06 0.0000 0.5000 0.5371 1.73E-06
GI_4506738-S NA 0.0000 0.5000 0.4758 6.66E-07
GI_15451941-S NA 0.2611 0.0441 0.6090 1.33E-06

geff, Gene-specific effect estimate (h 2 geff)

geff_p, significance of the gene-specific effect estimate

h2r, trait heritability estimate (h 2)

h2r_p, significance of the trait heritability estimate