Table 2.
Annotated transcript and SNP table
| Transcript | Gene | Chromosome | Start | Length | SNP | DBSnp rs | SNP annotation |
|---|---|---|---|---|---|---|---|
| GI_42544126-I | SF1 | chr11 | 64532075 | 14241 | 11_64511322 | rs2073798 | RASGRP2 intron |
| 11_64519345 | rs686171 | PYGM intron | |||||
| 11_64546106 | rs3741398 | SF1 2 kb upstream, nc transcript variant, 5’ UTR | |||||
| 11_64546257 | rs1633462 | SF1 2 kb upstream, nc transcript variant, 5’ UTR | |||||
| 11_64573589 | rs669976 | MEN1 intron | |||||
| 11_64576598 | rs67808744 | MEN1 intron | |||||
| 11_64577620 | rs7949944 | MEN1 5’ UTR, 2 kb upstream | |||||
| GI_23097237-S | CHST13 | chr3 | 126243130 | 19004 | 3_126218788 | rs6774768 | UROC1 intron |
| 3_126228953 | rs1873388 | UROC1 intron | |||||
| 3_126242964 | rs1388096 | CHST13 2 kb upstream | |||||
| 3_126245956 | rs4592980 | CHST13 intron/3’UTR | |||||
| 3_126246370 | rs1994642 | CHST13 intron/3’UTR | |||||
| 3_126247795 | rs11717719 | CHST13 intron | |||||
| 3_126247848 | rs11718493 | CHST13 intron | |||||
| GI_10863968-S | POLD4 | chr11 | 67119018 | 2034 | 11_67196237 | rs1476792 | |
| Hs.283934-S | TSPAN16 | chr19 | 11406815 | 30857 | 19_11340057 | rs17001244 | |
| 19_11358700 | rs4804579 | ||||||
| 19_11374675 | rs416231 | ||||||
| 19_11380295 | rs4804159 | ||||||
| 19_11406952 | rs374409 | ||||||
| GI_12056480-A | UTS2 | chr1 | 7907271 | 6280 | 1_7710810 | rs58905635 | CAMTA1 intron |
| 1_7725855 | rs4908471 | CAMTA1 intron | |||||
| 1_7749807 | rs3124797 | CAMTA1 intron | |||||
| GI_20986517-S | MAPK8IP1 | chr11 | 45907046 | 20970 | 11_45838926 | rs11038668 | |
| 11_45840939 | rs7112505 | ||||||
| 11_45891418 | rs7123390 | CRY2 intron | |||||
| Hs.58104-S | FAM101B | chr17 | 289771 | 8960 | 17_185027 | rs12951437 | |
| 17_198698 | rs11869174 | ||||||
| 17_206962 | rs11657163 | ||||||
| GI_41393558-I | KIF1B | chr1 | 10270763 | 97892 | 1_10270386 | rs3828081 | KIF1B 2 kb upstream |
| 1_10307453 | rs4240911 | KIF1B intron | |||||
| 1_10438687 | rs1536262 | KIF1B 3’UTR | |||||
| GI_4506738-S | RPS6KB2 | chr11 | 67195934 | 6945 | 11_67196237 | rs1476792 | RPS6KB2 intron |
| 11_67204342 | rs12787021 | PTPRCAP intron | |||||
| 11_67213956 | rs2109123 | ||||||
| 11_67253564 | rs7110021 | ||||||
| 11_67258805 | rs751567 | ||||||
| 11_67264679 | rs2276120 | ||||||
| GI_15451941-S | UBA52 | chr19 | 18682613 | 5657 | 19_18499151 | rs1059022 | |
| 19_18499238 | rs1804826 | ||||||
| 19_18715154 | rs72995445 | CRLF1 intron | |||||
| 19_18859680 | rs11085244 |
Gene symbols and coordinates for the ten transcripts that were detected as being potentially cis-regulated by SNPs in our covariance kernel. The closest SNPs to each gene are listed