Table 3.
Histone marks in the SNP linkage disequilibrium blocks in CD19+ B cells
| GWAS index SNP | Chr | Linkage disequilibrium blocks | Number of H3K27ac marks | Number of H3K4me1 marks | Number of H3K4me3 marks | Enhancer marks (yes/no) |
|---|---|---|---|---|---|---|
| rs10028805 | 4 | 102736456–102762581 | 44 | 61 | 13 | Yes |
| rs10036748 | 5 | 150457485–150461049 | 15 | 25 | 14 | Yes |
| rs10488631 | 7 | 128585616–128711874 | 43 | 62 | 11 | Yes |
| rs1059312 | 12 | 129277164–129288534 | 33 | 66 | 1 | Yes |
| rs10774625 | 12 | 111884608–112007756 | 0 | 34 | 0 | Yes |
| rs10807150 | 6 | 35154315–35278796 | 71 | 110 | 33 | Yes |
| rs10936599 | 3 | 169477506–169528523 | 32 | 18 | 33 | Yes |
| rs11644034 | 16 | 85967285–85980534 | 49 | 106 | 23 | Yes |
| rs11889341 | 2 | 191943742–191970120 | 0 | 0 | 0 | No |
| rs12022418 | 1 | 192521591–192535107 | 0 | 0 | 0 | No |
| rs1270942 | 6 | 31704294–32175415 | 57 | 58 | 123 | Yes |
| rs12802200 | 11 | 566936–567627 | 0 | 0 | 0 | No |
| rs1610555 | 18 | 67523453–67544046 | 0 | 0 | 0 | No |
| rs1801274 | 1 | 161470042–161479745 | 0 | 8 | 0 | Yes |
| rs1885889 | 13 | 100084234–100104106 | 17 | 43 | 3 | Yes |
| rs2009453 | 11 | 65399528–65405300 | 0 | 12 | 0 | Yes |
| rs223881 | 16 | 57386566–57317134 | 0 | 30 | 0 | Yes |
| rs2286672 | 17 | 4706123–4712617 | 1 | 7 | 7 | Yes |
| rs2289583 | 15 | 75285114–75370012 | 23 | 122 | 8 | Yes |
| rs2305772 | 19 | 52021247–52034940 | 2 | 35 | 11 | Yes |
| rs2421184 | 5 | 158884119–158886939 | 0 | 18 | 0 | Yes |
| rs2431697 | 5 | 159879978–159883217 | 0 | 2 | 0 | Yes |
| rs2476601 | 1 | 114303808–114377568 | 18 | 32 | 13 | Yes |
| rs2663052 | 10 | 50045456–50081232 | 0 | 1 | 0 | Yes |
| rs2732549 | 11 | 35073852–35098193 | 6 | 47 | 0 | Yes |
| rs2736340 | 8 | 11337587–11353000 | 40 | 71 | 29 | Yes |
| rs2941509 | 17 | 37885383–38077485 | 235 | 468 | 84 | Yes |
| rs3024505 | 1 | 206939904–206943968 | 0 | 48 | 0 | Yes |
| rs34572943 | 16 | 31272353–31276811 | 0 | 36 | 0 | Yes |
| rs3768792 | 2 | 213871709–213890232 | 0 | 10 | 0 | Yes |
| rs3794060 | 11 | 71138710–71203790 | 10 | 28 | 22 | Yes |
| rs4917014 | 7 | 50278187–50308811 | 17 | 57 | 0 | Yes |
| rs4948496 | 10 | 63803472–63819903 | 80 | 101 | 17 | Yes |
| rs61616683 | 22 | 39747050–39756650 | 5 | 17 | 0 | Yes |
| rs6568431 | 6 | 106574794–106597639 | 4 | 14 | 0 | Yes |
| rs6740462 | 2 | 65654364–65667272 | 1 | 20 | 27 | Yes |
| rs6932056 | 6 | 138132123–138243700 | 57 | 115 | 20 | Yes |
| rs740840 | 12 | 6327008–63600683 | 0 | 26 | 0 | Yes |
| rs7444 | 22 | 21920817–21983260 | 14 | 88 | 10 | Yes |
| rs7556469 | 1 | 198607998–198637582 | 47 | 81 | 26 | Yes |
| rs7726414 | 5 | 133232663–13877357 | 540 | 1176 | 284 | Yes |
| rs7941765 | 11 | 128499000–128500215 | 19 | 45 | 0 | Yes |
| rs849142 | 7 | 28162674–28200097 | 45 | 120 | 0 | Yes |
| rs9462027 | 6 | 34563164–34828553 | 95 | 171 | 41 | Yes |
| rs9652601 | 16 | 11164567–11207894 | 31 | 82 | 0 | Yes |
| rs9782955 | 1 | 235907825–236041129 | 38 | 71 | 15 | Yes |
Linkage disequilibrium blocks were obtained from the 1000 Genomes Project pilot 1 and/or HapMap3 database
Chr chromosome, GWAS genome-wide association studies, SNP single nucleotide polymorphism