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. 2016 Oct 10;113(46):13033–13038. doi: 10.1073/pnas.1614785113

Table S2.

Primers used for the PCR-based preparation of DNA templates for RNA transcription

Primer Description Sequence, 5′–3′*
5′-primer_80 Forward amplification primer for all 5′-L samples GGGATGTGCTGCAAGGCGATTAAGTTGGG
R_TSL4nativeBlunt Reverse amplification primer for 5′-L356 template mUmACCGACGCTCTCGCACCCATCTCTC
R_TSL4-344 Reverse amplification primer for 5′-L344 and 5′-L344ΔPBS template mCmGCACCCATCTCTCTCCTTCTAGCCTCC
R_TmSL4-344-lrAID Reverse amplification primer for 5′-L344-UUA lrAID and 5′-L344-UUG lrAID template mCmGCACTTATCTCTCTCCTTCTAGCCTCCGC
Top17 T7 promoter TAATACGACTCACTATA
DIS_237-281 Template for transcription of DIS237–281 RNA mGmGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCGAGTCCTGCCTATAGTGAGTCGTATTA
U5-gaga-AUG-UUAlrAID Template for transcription of U5:AUGUUA lrAID RNA mGmGCGCACTTATCTTCTCAGATAAGCACACCTATAGTGAGTCGTATTA
U5-gaga-AUG-UUGlrAID Template for transcription of U5:AUGUUG lrAID RNA mGmGCGCACTTATCTTCTCAGACAAGCACACCTATAGTGAGTCGTATTA
*

m denotes the incorporation of 2′ O-methyl RNA bases.