Table 1.
Histology | Sample-ID | sexe | TNM pathological stage | Total number of tags | RNAseq | Nb of CpG sites with at least 10 tags coverage per site | Nb of CpG sites with at least 100 tags coverage per site |
---|---|---|---|---|---|---|---|
MITF/TFE translocation RCC | T1 | F | T4N2M1 | 85 062 596 | Yes | 65 050 | 43 590 |
T2 | M | T1N2M1 | 75 410 891 | no | 98 341 | 38456 | |
T3 | M | T3bN0M0 | 71422259 | no | 139 443 | 44 191 | |
T24 | F | T3aN0M0 | 99 019 782 | no | 162226 | 43 215 | |
T34 | M | T3bN1M0 | 57537059 | yes | 158229 | 44375 | |
Clear-cell RCC | T11 | F | T2N0M0 | 118 594 689 | yes | 156 156 | 42 552 |
T12 | M | T2N0M0 | 42 845 148 | no | 53 989 | 33 982 | |
T15 | F | T1bN0M0 | 86725973 | no | 65104 | 40630 | |
Papillary RCC (Type I) | T14 | M | T1aN0M0 | 80 878 268 | no | 57 256 | 46 228 |
T20 | M | T2aNxM0 | 125 615 959 | yes | 59059 | 42120 | |
T21 | M | T4N1M0 | 91521140 | yes | 118971 | 45886 | |
Papillary RCC (Type II) | T7 | M | T1bN0M0 | 78 384 802 | no | 151 757 | 37 930 |
T8 | F | T3bN2M0 | 77404215 | no | 54928 | 45572 | |
Muscinous and spindle cell RCC | T13 | M | T1N0M0 | 51 426 774 | no | 148 280 | 44 584 |
T19 | F | T1bNxM0 | 27216549 | yes | 51127 | 38557 | |
Sarcomatoid RCC | T22 | F | T4N1M1 | 59 402 641 | no | 121837 | 46 118 |
T23 | M | T4N1M0 | 140885594 | no | 98104 | 44956 | |
Oncocytoma | T45 | M | T1aNxM0 | 79 100 507 | yes | 82 991 | 36 167 |
T46 | F | T1aNxM0 | 77335441 | yes | 87629 | 46205 | |
chromophobe | T10 | F | T2N0M0 | 82 187 775 | yes | 61 940 | 61 940 |
T16 | M | T2aNxM0 | 73 994 602 | yes | 78 618 | 45 828 | |
T17 | F | T1bNxM0 | 38917059 | yes | 51653 | 34117 | |
Normal | N4 | F | 87 459 889 | yes | 76 348 | 43 590 | |
N8 | F | 84567697 | yes | 61256 | 41514 |