Table 1.
High quality core SNVs in outbreak isolates using NCTC11168 = ATCCC 700819 as the reference
| Position in NCTC11168 | NCTC 11168 | 00– 2425 | 00–2426 | 00–2538 | 00–2544 | Protein | Locus in NCTC11168 |
|---|---|---|---|---|---|---|---|
| 192795 | G | A | A | A | G | amidophosphoribosyltransferase | Cj0196c |
| 226072 | C | A | A | A | C | intergenic | |
| 231489 | G | A | A | A | G | MFS transport protein | Cj0250c |
| 492104 | T | T | T | T | C | periplasmic protein | Cj0530 |
| 524447 | C | C | T | C | C | periplasmic protein | Cj0561c |
| 937334 | C | C | C | C | T | MtaB | Cj1006c |
| 959966 | G | G | G | G | A | DNA gyrase subunit A | Cj1027c |
| 1031608 | T | T | G | T | T | serine/threonine transporter SstT | Cj1097 |
| 1137283 | C | C | C | C | T | intergenic | |
| 1173179 | T | T | T | T | C | hypothetical protein | Cj1245c |
| 1181839 | G | A | A | A | G | LPS assembly protein | Cj1252 |
| 1189659 | A | A | A | A | G | major outer membrane protein | Cj1259 |
| 1298000 | A | A | A | A | G | secreted serine protease | Cj1365c |
| 1515973 | A | A | A | A | C | D-lactate dehydrogenase | Cj1585c |
| 1630514 | C | C | C | C | T | 2-isopropylmalate synthase | Cj1719c |