Skip to main content
. 2016 Nov 11;113(48):13744–13749. doi: 10.1073/pnas.1610917113

Table S2.

Kinetic parameters for GTP hydrolysis and peptidyl transfer from ternary complex with T-stem mutated tRNAGlu

GAA (Cognate) GAU GGA GAC
Mutants (kcat/Km)GTP (kcat/Km)GTP (kcat/Km)dip I F (kcat/Km)GTP (kcat/Km)dip I F (kcat/Km)GTP (kcat/Km)dip I F
(µM-1s-1) (mM-1s-1) (mM-1s-1) (mM-1s-1)
WT 8.1 ± 1.5 132 ± 10 1.26 ± 0.12 61 ± 12 105 ± 13 39 ± 3 0.29 ± 0.03 209 ± 42 133 ± 17 51 ± 3 0.38 ± 0.02 158 ± 31 134 ± 11
T1 5.5 ± 0.5 95 ± 6 1.27 ± 0.07 58 ± 6 75 ± 6 28 ± 2 0.27 ± 0.03 195 ± 20 104 ± 14 39 ± 2 0.43 ± 0.03 142 ± 15 89 ± 8
T2 10.2 ± 1.9 124 ± 25 2.26 ± 0.23 82 ± 22 55 ± 12 36 ± 2 0.60 ± 0.07 284 ± 55 60 ± 8 52 ± 3 0.89 ± 0.14 196 ± 38 59 ± 10
W1 1.2 ± 0.2 30 ± 7 1.56 ± 0.28 40 ± 11 19 ± 5 12 ± 2 0.30 ± 0.03 192 ± 24 39 ± 7 17 ± 2 0.62 ± 0.03 72 ± 16 27 ± 4
W2 2.2 ± 0.5 18 ± 3 1.10 ± 0.08 123 ± 32 17 ± 3 4.4 ± 2.1 0.19 ± 0.04 502 ± 263 23 ± 12 6.6 ± 1.6 0.34 ± 0.03 336 ± 106 19 ± 5

Kinetic efficiency for cognate and near-cognate GTP hydrolysis, (kcat/Km)GTP, were estimated from experiments with ribosomes at 1 and 2 µM, which are always in excess over ternary complex. The rate of GTP hydrolysis at 2 µM was always twice that at 1 µM with virtually identical kcat/Km estimates. Kinetic efficiencies for near-cognate dipeptide formation, (kcat/Km)dip, were derived from titrations of ternary complex in excess over ribosomes. Initial selection (I) was calculated from the ratio of cognate to near-cognate (kcat/Km)GTP parameters. Proofreading factor (F) was calculated from the ratio between near-cognate kcat/Km-values for GTP hydrolysis and dipeptide formation (see SI Materials and Methods). Data represent weighted averages from at least two independent experiments ± propagated SD.