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. 2016 Sep 19;5(11):e1232220. doi: 10.1080/2162402X.2016.1232220

Table 1.

Shared specificity and characteristics of BCR CD4+ T-cells epitopes.

Types Peptides Subfamily and regiona Sequence Length HLA DR binding Sharedb Shared (%) Total shared (%)
Normal donors VH P60-1 IGHV3-16FR2 MNWARKAPGKGLEWV 15 1101, 0301 0/64 0.0 VH 23/64 (36%)
VH P60-2 IGHV3-16FR2 NWARKAPGKGLEWVS 15 1101, 0301 0/64 0.0
VH P60-3 IGHV3-16FR2 WARKAPGKGLEWVSG 15 1101, 0301 0/64 0.0
VH P106-2 IGHV3-11FR3 KNSLYLQMNSLRAED 15 0401, 1101, 0701 2/64(VH) 3.1
VH P106-4 IGHV3-11FR3 SLYLQMNSLRAEDTA 15 0401, 1101, 0701 2/64(VH) 3.1
VH P106-8 IGHV3-11FR3 GRFTISRDNAKNSLY 15 0401, 1101, 0701 4/64(VH) 6.3
VH P106-11 IGHV3-11FR3 QMNSLRAEDTAVYYC 15 0401, 1101, 0701 3/64(VH) 4.6
VH P121-3 IGHV3-74FR3 AKNTLYLQMNSLRAE 15 0301, 1101 0/64 0.0
VHP121-10 IGHV3-74FR3 DSVKGRFTISRDNAK 15 0301, 1101 5/64(VH) 7.8
VHP125-13 IGHV4-30-2FR3 FSLKLSSVTAADTAV 15 0101, 0301 2/64(VH) 3.1
Patients FL1VH17 IGHV4-34FR3 SRLTISVDTSKNQFS 15 0701, 1501, 0801,101 0/64 0.0
FL2VH3 IGHV4 FR1 PGLVKPSETLSLTCT 15 1101, 0701, 0801,0101,1 501,1301 3/64(VH) 4.7
FL2VH4 IGHV4CDR1 KPSETLSLTCTVSGG 15 1101, 0701,0801,0101, 1501,1401 2/64 (VH) 3.1
FL1VL5 IGLV1CDR1 RVTISCSGSTSNIGS 15 0701 0/90 0.0 VL 7/90 (7.8%)
SMZL1VL1 IGLV1FR1 QSVLTQPPSASGTPGQ 16 0301, 0401 7/90(VL) 7.8
PL1VK12 IGKV3 CDR1 YLAWYQQKPG 10 0701,1401,0801 20/123 (VK) 16.3 VK 20/123 (16.3%)
Normal donors VK P14-5 IGKV2-24FR1 QTPLSSPVTLGQPAS 15 1101, 0801, 0701,1301 0/123 0.0
a

Analysis and blast by IMGT Web site (http://imgt.cines.fr/IMGT_vquest/vquest?livret=0&Option=humanIg).

b

Individual peptide sequences were compared with Ig V region sequences available from either 64 FL patients with VH chain, 90 FL patients with l light chain, or 123 patients with k light chain isotype, respectively.