Table 1.
Types | Peptides | Subfamily and regiona | Sequence | Length | HLA DR binding | Sharedb | Shared (%) | Total shared (%) |
---|---|---|---|---|---|---|---|---|
Normal donors | VH P60-1 | IGHV3-16FR2 | MNWARKAPGKGLEWV | 15 | 1101, 0301 | 0/64 | 0.0 | VH 23/64 (36%) |
VH P60-2 | IGHV3-16FR2 | NWARKAPGKGLEWVS | 15 | 1101, 0301 | 0/64 | 0.0 | ||
VH P60-3 | IGHV3-16FR2 | WARKAPGKGLEWVSG | 15 | 1101, 0301 | 0/64 | 0.0 | ||
VH P106-2 | IGHV3-11FR3 | KNSLYLQMNSLRAED | 15 | 0401, 1101, 0701 | 2/64(VH) | 3.1 | ||
VH P106-4 | IGHV3-11FR3 | SLYLQMNSLRAEDTA | 15 | 0401, 1101, 0701 | 2/64(VH) | 3.1 | ||
VH P106-8 | IGHV3-11FR3 | GRFTISRDNAKNSLY | 15 | 0401, 1101, 0701 | 4/64(VH) | 6.3 | ||
VH P106-11 | IGHV3-11FR3 | QMNSLRAEDTAVYYC | 15 | 0401, 1101, 0701 | 3/64(VH) | 4.6 | ||
VH P121-3 | IGHV3-74FR3 | AKNTLYLQMNSLRAE | 15 | 0301, 1101 | 0/64 | 0.0 | ||
VHP121-10 | IGHV3-74FR3 | DSVKGRFTISRDNAK | 15 | 0301, 1101 | 5/64(VH) | 7.8 | ||
VHP125-13 | IGHV4-30-2FR3 | FSLKLSSVTAADTAV | 15 | 0101, 0301 | 2/64(VH) | 3.1 | ||
Patients | FL1VH17 | IGHV4-34FR3 | SRLTISVDTSKNQFS | 15 | 0701, 1501, 0801,101 | 0/64 | 0.0 | |
FL2VH3 | IGHV4 FR1 | PGLVKPSETLSLTCT | 15 | 1101, 0701, 0801,0101,1 501,1301 | 3/64(VH) | 4.7 | ||
FL2VH4 | IGHV4CDR1 | KPSETLSLTCTVSGG | 15 | 1101, 0701,0801,0101, 1501,1401 | 2/64 (VH) | 3.1 | ||
FL1VL5 | IGLV1CDR1 | RVTISCSGSTSNIGS | 15 | 0701 | 0/90 | 0.0 | VL 7/90 (7.8%) | |
SMZL1VL1 | IGLV1FR1 | QSVLTQPPSASGTPGQ | 16 | 0301, 0401 | 7/90(VL) | 7.8 | ||
PL1VK12 | IGKV3 CDR1 | YLAWYQQKPG | 10 | 0701,1401,0801 | 20/123 (VK) | 16.3 | VK 20/123 (16.3%) | |
Normal donors | VK P14-5 | IGKV2-24FR1 | QTPLSSPVTLGQPAS | 15 | 1101, 0801, 0701,1301 | 0/123 | 0.0 |
Analysis and blast by IMGT Web site (http://imgt.cines.fr/IMGT_vquest/vquest?livret=0&Option=humanIg).
Individual peptide sequences were compared with Ig V region sequences available from either 64 FL patients with VH chain, 90 FL patients with l light chain, or 123 patients with k light chain isotype, respectively.