Table II.
Size of the predicted subproteomes, using a combination of TargetP, TMHMM, LumenP, and SignalP, as well as filters derived from experimental data sets (as outlined in Fig. 4, A and B)
| n | % | % | |
|---|---|---|---|
| All Arabidopsis | 28,581a | 100 | n.r. |
| All membraneb | 6,320 | 22.11 | n.r. |
| All Ctp | 4,255c | 14.90 | 100 |
| Stromad | 3,387 | 11.80 | 79.60 |
| Membranede | 520 | 1.80 | 12.20 |
| Membrane + lTPd | 57 | 0.20 | 1.30 |
| Lumend (LumenP) | 291 | 1.00 | 6.80 |
| Lumen + TATd (LumenP) | 71 | 0.25 | 1.70 |
| Lumen (SignalP) | 285 | 1.00 | 6.70 |
| Lumen + TAT (SignalP) | 50 | 0.17 | 1.12 |
a
Represents 28,581 gene models for 27,170 genes.
b
TMHMM; 7,238 (25.3%) in Aramemnon.
c
Represents 4,013 genes with 4,255 gene models.
d
Using the prediction scheme with LumenP (see Fig. 4A).
e
1,015 (23.9% of all cTP-predicted proteins) in Aramemnon.