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. 2016 Nov 14;5(11):e269. doi: 10.1038/oncsis.2016.67

Table 2. Primers used in this study.

Gene/ChIP/luciferase assay Forward primer Reverse primer
Notch3 5′-CTGCTGTTGGACCACTTTGC-3′ 5′-CTTTGAGGCCAGGGAGGAAG-3′
Notch1 5′-CGCTGACGGAGTACAAGTG-3′ 5′-GTAGGAGCCGACCTCGTTG-3′
Kibra 5′-AGCTCCAAGTATGACCCTGAG-3′ 5′-AAAGCCACGCTCTTTGAACTG-3′
Merlin 5′-TTGCGAGATGAAGTGGAAAGG-3′ 5′-CAAGAAGTGAAAGGTGACTGGTT-3′
Ex 5′-CCACCTCTTTGGACTCAGTGT-3′ 5′-CAAATTGGTCGATACCCTTGCT-3′
CTGF 5′- ACCGACTGGAAGACACGTTTG-3′ 5′- CCAGGTCAGCTTCGCAAGG-3′
Tead 5′-GGCCGGGAATGATTCAAACAG-3′ 5′- CAATGGAGCGACCTTGCCA-3′
Cyr61 5′-CTCGCCTTAGTCGTCACCC-3′ 5′-CGCCGAAGTTGCATTCCAG-3′
Wwtr1 5′-GATCCTGCCGGAGTCTTTCTT-3′ 5′- CACGTCGTAGGACTGCTGG-3′
E-cadherin 5′-AAAGGCCCATTTCCTAAAAACCT-3′ 5′-TGCGTTCTCTATCCAGAGGCT-3′
RBP-Jk 5′-CGGCCTCCACCTAAACGAC-3′ 5′-TCCATCCACTGCCCATAAGAT-3′
Hes-1 5′-TCAACACGACACCGGATAAAC-3′ 5′-GCCGCGAGCTATCTTTCTTCA-3′
Delta 5′-GATTCTCCTGATGACCTCGCA-3′ 5′-TCCGTAGTAGTGTTCGTCACA-3′
Hey-1 5′-ATCTGCTAAGCTAGAAAAAGCCG-3′ 5′-GTGCGCGTCAAAGTAACCT-3′
Crumb3a 5′-CAGGTGCCTCTCAAATTCTTGC-3′ 5′-ACAGGAACCAATGGTAGTTTCAC-3′
Vimentin 5′-GACAATGCGTCTCTGGCACGTCT-3′ 5′-TCCGCCTCCTGCAGGTTCTT-3′
GAPDH 5′-TGGACTCCACGACGTACTCAG-3′ 5′-ACATGTTCCAATATGATTCCA-3′
Luciferase assay: wild-type CSL-binding site 5′-CGAGCTCGACCCAACTGGGCTTCATT-3′ 5′-TCCCCCGGGGGACCCATCTCCTCTTACATCTGTG-3′
Luciferase assay: mutated CSL-binding site 5′-GGCAAAAAAGGGTTAAATCTCAGTACACAGATGTAA-3′ 5′-TTACATCTGTGTACTGAGATTTAACCCTTTTTTGCC-3′
ChIP primers flanking RBP-Jk-binding site in forward orientation 5′-GACCCAAACAGAGGAAGTGTAG -3′ 5′-GGCCCTCCTTCATTCCATAAA-3′
ChIP primers flanking RBP-Jk-binding site in reverse orientation 5′-ACCCAACTGGGCTTCATT-3′ 5′-CCCATCTCCTCTTACATCTGTG-3′
shNotch3 5′-CACCGTATAGGTGTTGACGCCATCCACGCATT CAAGAGATGCGTGGATGGCGTCAACACCTATATTTTTTG-3′ 5'-GATCCAAAAAATATAGGTGTTGACGCCATCCAC GCATCTCTTGAATGCGTGGATGGCGTCAACACCTATAC-3′