Table III.
Identification of putative Arabidopsis ACRE orthologs and summary of their transcription patterns in response to flg22
| ACRE Number | Genbank Accession Number | Arabidopsis ACRE Orthologs | AGI Number | BLASTX Results | TBLASTN Results (TOGA) | Transcription Patternsa Cells/Seedlings |
|---|---|---|---|---|---|---|
| 1 | AF211527 | At-ERF5 ethylene responsive element binding factor | At5g47230 | 1.5 e−36 | 12.3 e−36 | TI/TI |
| At-ERF6 ethylene responsive element binding factor | At4g17490 | 4.1 e−36 | 5.4 e−36 | TI/TI | ||
| 4 | AF211528 | Putative disease resistance protein (TIR-NBS-LRR) | At5g17680 | 4.1 e−107 | 7.1 e−99 | TI/PI |
| 31 | AF211529 | Calcium-binding protein-like | At4g20780 | 1.0 e−48 | 3.2 e−48 | PI/PI |
| Calmodulin-like protein | At5g44460 | 1.7 e−46 | 4.8e−46 | NC/NC | ||
| 74 | AY220484 | U-box protein (AtPUB21) | At5g37490 | 1.0 e−80 | 2.4 e−47 | TI/PI |
| U-box protein (AtPUB20) | At1g66160 | 3.0 e−63 | 3.8 e−63 | TI/PI | ||
| 111 | AF211530 | DRE binding protein (DREB1A) | At4g25480 | 3.6 e−53 | 3.8 e−52 | NC/NC |
| DRE binding protein (DREB1B) | At4g25490 | 1.2 e−52 | 1.4 e−52 | TI/TI | ||
| DRE binding protein (DREB1C) | At5g51990 | 5.2 e−52 | 1.8 e−52 | NC/NC | ||
| DRE binding protein (similar to DREB1C) | At4g25470 | 8.5 e−52 | 4.2 e−51 | NC/NC | ||
| 126 | AY220477 | AtWRKY72 | At5g15130 | 5.4 e−41 | 7.1 e−49 | PI/PI |
| 132 | AF211532 | RING-H2 zinc finger protein ATL3 | At1g53820 | 6.5 e−34 | 4.1 e−26 | NC/NC |
| Putative RING-H2 zinc finger protein | At3g16720 | 2.9 e−26 | 6.2 e−26 | TI/TI | ||
| 137 | AF211537 | Hypothetical protein | At3g23160 | 1.5 e−43 | 1.3 e−43 | NC/NC |
| 141 | AY220478 | Putative ligand-gated ion channel | At2g29100 | 3.3 e−137 | 2.1 e−131 | NC/NC |
| 189 | AY220479 | F-box protein | At1g47056 | 3.4 e−158 | 3.9 e−158 | NC/NC |
| SKIP1 interacting partner 2 (SKIP2) | At5g67250 | 5.6 e−158 | 5.2 e−158 | PI/PI | ||
| F-box (AtFBL8/AtFBL24) | At4g07400 | 1.8 e−152 | 4.0 e−152 | NC/NC | ||
| F-box (AtFBL16) | At3g50080 | 4.1 e−146 | 4.2 e−146 | NC/NC | ||
| 216 | AY220480 | Putative protein kinase | At2g30260 | 3.6 e−131 | 3.6 e−131 | NC/NC |
| 231 | AF211536 | Glycosyl transferase-like | At3g28340 | 1.8 e−127 | 2.9 e−127 | TI/TI |
| 264 | AY220481 | Putative protein kinase | At2g05940 | 1.2 e−155 | 1.2 e−155 | TI/TI |
| Ser/Thr protein kinase | At5g35580 | 2.9 e−145 | 1.1 e−143 | TI/NC | ||
| 275 | AY220482 | Disease resistance protein (Cf-like) | At1g45616 | 5.0 e−46 | 2.1 e−46 | NC/NC |
| 276 | AY220483 | U-box protein (AtPUB17) | At1g29340 | 1.1 e−227 | 9.7 e−228 | TI/TI |
| 284 | AY220484 | Protein phosphatase 2C (PP2C) | At2g30020 | 4.7 e−104 | 6.0 e−104 | TI/TI |
| Protein phosphatase 2C (PP2C) | At4g08260 | 1.3 e−99 | 2.0 e−99 | TI/TI | ||
| Protein phosphatase 2C (PP2C) | At2g40180 | 3.9 e−95 | 5.3 e−95 | PI/PI | ||
| NtCDPK2 | AJ344154 | Calcium-dependant protein kinase (CPK1) | At5g04870 | 4.1 e−239 | 7.0 e−217 | PI/NC |
| Calium-dependant protein kinase (CPK2) | At3g10660 | 9.1 e−233 | 1.5 e−209 | NC/NC | ||
| Calcium-dependant protein kinase (CPK20) | At2g38910 | 3.0 e−212 | 1.5 e−166 | NC/NC |
a
Summary of the AtACRE transcription patterns in Ler treated suspension cells and Col-0 treated seedlings. TI, transiently induced; PI, progressively induced; NC, no change.