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. 2016 Jan 13;17(6):953–966. doi: 10.1093/bib/bbv110

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© The Author 2016. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 1. — Overview of the DR called by the single and multi-replicate pipelines for the FoxA1 data set: (A) Number (barplots) and size distribution (violin plots) of detected DR in each condition and size distribution for the single replicate pipeline. (B) Same as shown in A for the multi-replicate pipeline. (C) Plots showing the number of DR returned by each method as a function of the P-value threshold (plain lines) or FDR (dotted lines). (D) An example of a region, highlighting the difference between the different tools in terms of length of DR. A colour version of this figure is available online at BIB online: https://academic.oup.com/bib.