Table 1. EGO ortholog classes in which msari found significant conservation of secondary structure.
| EGO accession no. | msari significance | Sequence names and roles | Known secondary structure |
|---|---|---|---|
| TOG126766 | –56.99 | rRNA intron-encoded homing endonuclease | Yes |
| TOG126402 | –55.03 | ||
| TOG127160 | –54.68 | ||
| TOG127627 | –46.86 | Malate dehydrogenase mitochondrial precursor | Yes |
| TOG126375 | –46.68 | Monooxygenase | Yes |
| TOG126497 | –46.25 | Serine/threonine phosphatase | |
| TOG127343 | –44.78 | Adenosylhomocysteinase | |
| TOG129802 | –43.47 | ||
| TOG126712 | –42.32 | RNA helicase | |
| TOG126428 | –41.70 | Heat shock | Yes |
| TOG128897 | –40.41 | Chloroplast precursor | |
| TOG128956 | –37.42 | Cyclophilin | |
| TOG127614 | –36.40 | Ras-related GTP binding | |
| TOG127244 | –36.35 | Nonmuscle myosin heavy chain | Yes |
| TOG126639 | –34.25 | Aldehyde dehydrogenase | Yes |
| TOG127024 | –33.94 | Proteasome subunit | |
| TOG126979 | –33.45 | Glucose-related Ig | Yes |
| TOG126982 | –32.82 | Seryl-tRNA synthetase | Yes |
| TOG128055 | –32.73 | CDH1-D | |
| TOG127088 | –32.67 | 14-3-3 | |
| TOG126299 | –32.26 | β tubulin | Yes |
| TOG126989 | –32.24 | Cardiac l-type calcium channel | |
| TOG126537 | –32.18 | Peroxiredoxin | |
| TOG128383 | –31.64 | Chaperonin | |
| TOG126893 | –31.50 | Glyceraldehyde-3-phosphate dehydrogenase | |
| TOG126944 | –31.45 | Methionine aminopeptidase | |
| TOG126736 | –31.45 | α tubulin | Yes |
| TOG127919 | –31.39 | Succinate dehydrogenase, flavoprotein subunit | |
| TOG128571 | –31.28 | Actin | Yes |
| TOG128538 | –30.90 | Phosphoenolpyruvate carboxylase | |
| TOG127997 | –30.66 | Pyruvate dehydrogenase E1 α subunit | |
| TOG127466 | –30.43 | Sodium channel α subunit | Yes |
| TOG126748 | –30.33 | Lipoamide dehydrogenase | |
| TOG127127 | –30.14 | Casein kinase 2 α subunit | |
| TOG126615 | –30.07 | Enolase (2-phosphoglycerate dehydratase) | Yes |
| TOG126472 | –29.94 | Methionine adenosyltransferase | |
| TOG127409 | –29.85 | GTP binding | |
| TOG127282 | –29.63 | ||
| TOG127052 | –29.48 | Myo-inositol-1-phosphate synthase |
When EGO gave apparently contradictory descriptions for the genes in a class, we chose the description pertaining to the most genes. Some descriptions are associated with more than one significant ortholog class. In those cases, we show only the class in which msari found the highest score. We searched the literature in an attempt to determine whether these or very similar genes are already known to contain mRNA secondary structure. We found positive indications in refs. 36-47