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Types of reads and total mapped reads distribution. A: The raw, clean, total mapped, and unique mapped reads in each of the 6 treatment groups. NC1, 1 d post infection (dpi) non-challenged birds; NC5, 5 dpi non-challenged birds; R1, 1 dpi resistant birds; R5, 5 dpi resistant birds; S1, 1 dpi susceptible birds; S5, 5 dpi susceptible birds. B: The total mapped reads distribution of the thymus transcriptome.
